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The map label for this gene is xerD [C]

Identifier: 161525449

GI number: 161525449

Start: 2490666

End: 2491850

Strand: Direct

Name: xerD [C]

Synonym: Bmul_2279

Alternate gene names: 161525449

Gene position: 2490666-2491850 (Clockwise)

Preceding gene: 161525447

Following gene: 161525453

Centisome position: 72.23

GC content: 56.46

Gene sequence:

>1185_bases
ATGACAAAGACCAAACACAGCGTACCGGCGGCGTGTTCAGACCCCGGCCCACTGAACACGTTGTTACAGCAATTCGAGAA
GCACCTGAAAACCCTGGGTTACTCGCCCCACCAGACCTTAAGAGTGAATCTGTCCGCCGTCAGTCACTTTGTGTGCTGGC
TGAATAAGGCAGGCATCGACCTCAGCGAGGTGACCGAGACTGTCATTGAACAGTTTGCTTGCCATCAGTGCCAGAGTACG
GCGAGGTGGTGGCATGGAGGGCCTGAACCAAGATATCTGGCACGCATTCGTCGATTCCTTCGTTTCGTGGCCGTTGGCAG
AATCGTCCGCTCAGGCGCAGCACTCTCGCCGCCAGAGGTCGACGCCCGAGTTGCCGAATTCCAGAACTGGCTTCGACACC
ACCGTGGAGTCTCCGAACGTACCATCAATTCCCATGGCCTTCTGGTTATGCGAATGATGCCAACACTCGGCACCGAGCCT
GCTGACTACAACGCACAGTGCATTCGCCAGGTCATACTGGATGAGGCTCAGAAATGCTCCCGTGCCTATCTTACGAAGAT
GAGAACAGCGCTGCGAGGCTATCTCAGATTTCTGATTGCACGAGGCGAATGCAAACCATGGCTGGATCAAGCCGTACCCG
TCTTCGCGCACTGGCAGTTGTCCTCTCTGCCACGCTACTTGTCCGACTCGGACATTGAGCGAGTCATTGCAGCGTGTGAA
ACGGGAACACCGCACGGAATTCGTGACAAGGCCATTATTCTGCTCCTTGCCCGACTTGGGCTCCGTGGCGGCGACATCCT
TACCATGCGCCTCTGCGACATCGAGTGGGCACAGGGATCGTTGCGGGTCAGAGGCAAGGGGCGTAGAGAAGTGCGGCTAC
CACTGCCTCAAGATGCCGGCGATGTACTGCTGACGTACATCGATCAGGTCAGACCGTTCGCTGACTCCGATCGGATGTTC
TTGCGACTGCAGGCTCCCTATCGGCCATTCGCGAAATCTTGTGCTGTCTCGCAGATTGTTCAGCGTGCCCTTGAGCGAGC
AGGCATCGCAGATGCCCCTTCGCGAGGCGCAAATTTGTTACGCCATTCTGCAGCTACCAGTTTGCTGCGCGCTGGGGCCA
GATTGTGCAACCTCTTTTCTGTAAATTTCCGGATTGGCGGTCATGACATTCGGGTTACGGGTTGA

Upstream 100 bases:

>100_bases
TTTGCCAAGGGTGATTTGGCGCTGATTTCCAGCGTCTGGTGCTCCGCATAATTTACGGTCTCTCCTTGATGCCATGGTGG
CATCGTAGAGGAGAACCGAA

Downstream 100 bases:

>100_bases
AGTTGAGATAGACCTTGCCGGTCATCCACTCGTCGTCGAGTTCGGCGAGCAGTGCGGAGACAAGGCGCAGGCAGGAATCG
GGGTTGGGGAAGATGCTCGC

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 393

Protein sequence:

>394_residues
MTKTKHSVPAACSDPGPLNTLLQQFEKHLKTLGYSPHQTLRVNLSAVSHFVCWLNKAGIDLSEVTETVIEQFACHQCQST
ARWWHGGPEPRYLARIRRFLRFVAVGRIVRSGAALSPPEVDARVAEFQNWLRHHRGVSERTINSHGLLVMRMMPTLGTEP
ADYNAQCIRQVILDEAQKCSRAYLTKMRTALRGYLRFLIARGECKPWLDQAVPVFAHWQLSSLPRYLSDSDIERVIAACE
TGTPHGIRDKAIILLLARLGLRGGDILTMRLCDIEWAQGSLRVRGKGRREVRLPLPQDAGDVLLTYIDQVRPFADSDRMF
LRLQAPYRPFAKSCAVSQIVQRALERAGIADAPSRGANLLRHSAATSLLRAGARLCNLFSVNFRIGGHDIRVTG

Sequences:

>Translated_394_residues
MTKTKHSVPAACSDPGPLNTLLQQFEKHLKTLGYSPHQTLRVNLSAVSHFVCWLNKAGIDLSEVTETVIEQFACHQCQST
ARWWHGGPEPRYLARIRRFLRFVAVGRIVRSGAALSPPEVDARVAEFQNWLRHHRGVSERTINSHGLLVMRMMPTLGTEP
ADYNAQCIRQVILDEAQKCSRAYLTKMRTALRGYLRFLIARGECKPWLDQAVPVFAHWQLSSLPRYLSDSDIERVIAACE
TGTPHGIRDKAIILLLARLGLRGGDILTMRLCDIEWAQGSLRVRGKGRREVRLPLPQDAGDVLLTYIDQVRPFADSDRMF
LRLQAPYRPFAKSCAVSQIVQRALERAGIADAPSRGANLLRHSAATSLLRAGARLCNLFSVNFRIGGHDIRVTG
>Mature_393_residues
TKTKHSVPAACSDPGPLNTLLQQFEKHLKTLGYSPHQTLRVNLSAVSHFVCWLNKAGIDLSEVTETVIEQFACHQCQSTA
RWWHGGPEPRYLARIRRFLRFVAVGRIVRSGAALSPPEVDARVAEFQNWLRHHRGVSERTINSHGLLVMRMMPTLGTEPA
DYNAQCIRQVILDEAQKCSRAYLTKMRTALRGYLRFLIARGECKPWLDQAVPVFAHWQLSSLPRYLSDSDIERVIAACET
GTPHGIRDKAIILLLARLGLRGGDILTMRLCDIEWAQGSLRVRGKGRREVRLPLPQDAGDVLLTYIDQVRPFADSDRMFL
RLQAPYRPFAKSCAVSQIVQRALERAGIADAPSRGANLLRHSAATSLLRAGARLCNLFSVNFRIGGHDIRVTG

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=285, Percent_Identity=27.719298245614, Blast_Score=75, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 44186; Mature: 44055

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKTKHSVPAACSDPGPLNTLLQQFEKHLKTLGYSPHQTLRVNLSAVSHFVCWLNKAGID
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHCCCC
LSEVTETVIEQFACHQCQSTARWWHGGPEPRYLARIRRFLRFVAVGRIVRSGAALSPPEV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
DARVAEFQNWLRHHRGVSERTINSHGLLVMRMMPTLGTEPADYNAQCIRQVILDEAQKCS
HHHHHHHHHHHHHHCCCCCCCCCCCCEEHEEEHHHCCCCCCCCCHHHHHHHHHHHHHHHH
RAYLTKMRTALRGYLRFLIARGECKPWLDQAVPVFAHWQLSSLPRYLSDSDIERVIAACE
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHEECCHHHCCHHCCHHHHHHHHHHHC
TGTPHGIRDKAIILLLARLGLRGGDILTMRLCDIEWAQGSLRVRGKGRREVRLPLPQDAG
CCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCEECCCCEEEECCCCCEEECCCCCCHH
DVLLTYIDQVRPFADSDRMFLRLQAPYRPFAKSCAVSQIVQRALERAGIADAPSRGANLL
HHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
RHSAATSLLRAGARLCNLFSVNFRIGGHDIRVTG
HHHHHHHHHHHHHHHHHHEEEEEEECCEEEEECC
>Mature Secondary Structure 
TKTKHSVPAACSDPGPLNTLLQQFEKHLKTLGYSPHQTLRVNLSAVSHFVCWLNKAGID
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHCCCC
LSEVTETVIEQFACHQCQSTARWWHGGPEPRYLARIRRFLRFVAVGRIVRSGAALSPPEV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
DARVAEFQNWLRHHRGVSERTINSHGLLVMRMMPTLGTEPADYNAQCIRQVILDEAQKCS
HHHHHHHHHHHHHHCCCCCCCCCCCCEEHEEEHHHCCCCCCCCCHHHHHHHHHHHHHHHH
RAYLTKMRTALRGYLRFLIARGECKPWLDQAVPVFAHWQLSSLPRYLSDSDIERVIAACE
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHEECCHHHCCHHCCHHHHHHHHHHHC
TGTPHGIRDKAIILLLARLGLRGGDILTMRLCDIEWAQGSLRVRGKGRREVRLPLPQDAG
CCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCEECCCCEEEECCCCCEEECCCCCCHH
DVLLTYIDQVRPFADSDRMFLRLQAPYRPFAKSCAVSQIVQRALERAGIADAPSRGANLL
HHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
RHSAATSLLRAGARLCNLFSVNFRIGGHDIRVTG
HHHHHHHHHHHHHHHHHHEEEEEEECCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]