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The map label for this gene is rbcR [H]

Identifier: 161524868

GI number: 161524868

Start: 1868316

End: 1869215

Strand: Reverse

Name: rbcR [H]

Synonym: Bmul_1695

Alternate gene names: 161524868

Gene position: 1869215-1868316 (Counterclockwise)

Preceding gene: 161524870

Following gene: 161524865

Centisome position: 54.2

GC content: 67.67

Gene sequence:

>900_bases
ATGTCGACACCGACGCTCAAGCAGCTCGATGCCTTTTATTGGGCCGCGACCTGCGCCAATTTCGCCACGGCCGCGCAGCG
GCTTCATTTGTCCGTGTCGTCGTTGTCGAAGCGGATCAACGAACTCGAACAGGTACTCGGGCGAACGCTGTTCGACCGAA
GCGGCTATCGCGCCACGCTGACTCAGGACGGCGAAAGTCTGCTGCCGACGGCGCTGCGCGTGCTCGAATCCGTCGCGACG
ATCCAGGACACCTTCGGTCAGCACAACGGACTGTCGGGGCGACTACGCTTCGGCGTCGGCGAGTTGTCGGCGATGACCTG
GCTGCCGCGTTTCGTCGCCGCCGTTCAAAAGCTGCACGGCCAGCTGCAGCTCGAGCCGCATGTCGACGTCGGCGAGGCGC
TCGAGGAGAAGGTCGACGCGGGCGAGCTGGACTTCGCGGTGGTCGCGGGTCGCTCGTCGCGCAGCAGCATCGTGTCCCAG
CCGGTGGCGGAAGCGCGATTCGCCTGGATGGCGGCGGAGCGACTCGTCGGCCGTCAGCGCACACTGACGCCGGCGCTGCT
CGCGCGGCATGCGCTCGTGACGCTGCCCGCCGGGTCGGGCGTCACGCGCATTCTGGACGAGTGGCTGCTTGCACGCGGTA
TCGACAGTCCGCGCCACATCACGTGCAACAACTGGTTTGCCGTGGCGGGCATGCTGCGCGAAGGCGTCGGCATCGGCTTT
CTGCCGACGGCATGGGAGACGTCGCGCGCGGGCGGAGCGCTGGTCCGTCTGACGAGCCAGCCGGCGTTGTCGCCGCTGCA
TTACGCATTTCAATGGCGGCGCGGCGACCTGCGCGCGACGATTCCGGCCATGCTGGCACTCGTGCGGCAGCACGTGGCGT
TCGACGTGCCGCTCGCATGA

Upstream 100 bases:

>100_bases
GGATTCTCCTTTTGATTCAAGACGAGGGCTCATGCTAGGTTGACCGCGGTTTGAATAAAAGCGATATTCCTTCGAAATTC
ATGTTCGCTAAAAGAGAACA

Downstream 100 bases:

>100_bases
GCGTCGCCGCACCGGCCCGTCGCGGCGCGGCGCGGTGCTCAGCTGATTTCGCGTCCCTTCGTTTCCGGCAGGAGCAACGC
GGTGATCAGCACGACCAGAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MSTPTLKQLDAFYWAATCANFATAAQRLHLSVSSLSKRINELEQVLGRTLFDRSGYRATLTQDGESLLPTALRVLESVAT
IQDTFGQHNGLSGRLRFGVGELSAMTWLPRFVAAVQKLHGQLQLEPHVDVGEALEEKVDAGELDFAVVAGRSSRSSIVSQ
PVAEARFAWMAAERLVGRQRTLTPALLARHALVTLPAGSGVTRILDEWLLARGIDSPRHITCNNWFAVAGMLREGVGIGF
LPTAWETSRAGGALVRLTSQPALSPLHYAFQWRRGDLRATIPAMLALVRQHVAFDVPLA

Sequences:

>Translated_299_residues
MSTPTLKQLDAFYWAATCANFATAAQRLHLSVSSLSKRINELEQVLGRTLFDRSGYRATLTQDGESLLPTALRVLESVAT
IQDTFGQHNGLSGRLRFGVGELSAMTWLPRFVAAVQKLHGQLQLEPHVDVGEALEEKVDAGELDFAVVAGRSSRSSIVSQ
PVAEARFAWMAAERLVGRQRTLTPALLARHALVTLPAGSGVTRILDEWLLARGIDSPRHITCNNWFAVAGMLREGVGIGF
LPTAWETSRAGGALVRLTSQPALSPLHYAFQWRRGDLRATIPAMLALVRQHVAFDVPLA
>Mature_298_residues
STPTLKQLDAFYWAATCANFATAAQRLHLSVSSLSKRINELEQVLGRTLFDRSGYRATLTQDGESLLPTALRVLESVATI
QDTFGQHNGLSGRLRFGVGELSAMTWLPRFVAAVQKLHGQLQLEPHVDVGEALEEKVDAGELDFAVVAGRSSRSSIVSQP
VAEARFAWMAAERLVGRQRTLTPALLARHALVTLPAGSGVTRILDEWLLARGIDSPRHITCNNWFAVAGMLREGVGIGFL
PTAWETSRAGGALVRLTSQPALSPLHYAFQWRRGDLRATIPAMLALVRQHVAFDVPLA

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=237, Percent_Identity=27.8481012658228, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790262, Length=239, Percent_Identity=26.7782426778243, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788748, Length=246, Percent_Identity=26.8292682926829, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790399, Length=264, Percent_Identity=24.2424242424242, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI87081904, Length=155, Percent_Identity=29.6774193548387, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788887, Length=299, Percent_Identity=23.0769230769231, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32613; Mature: 32482

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTPTLKQLDAFYWAATCANFATAAQRLHLSVSSLSKRINELEQVLGRTLFDRSGYRATL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
TQDGESLLPTALRVLESVATIQDTFGQHNGLSGRLRFGVGELSAMTWLPRFVAAVQKLHG
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCC
QLQLEPHVDVGEALEEKVDAGELDFAVVAGRSSRSSIVSQPVAEARFAWMAAERLVGRQR
CEEECCCCCHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCHH
TLTPALLARHALVTLPAGSGVTRILDEWLLARGIDSPRHITCNNWFAVAGMLREGVGIGF
CCCHHHHHHHHHEEECCCCCHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHCCCCCC
LPTAWETSRAGGALVRLTSQPALSPLHYAFQWRRGDLRATIPAMLALVRQHVAFDVPLA
CCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
STPTLKQLDAFYWAATCANFATAAQRLHLSVSSLSKRINELEQVLGRTLFDRSGYRATL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
TQDGESLLPTALRVLESVATIQDTFGQHNGLSGRLRFGVGELSAMTWLPRFVAAVQKLHG
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCC
QLQLEPHVDVGEALEEKVDAGELDFAVVAGRSSRSSIVSQPVAEARFAWMAAERLVGRQR
CEEECCCCCHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCHH
TLTPALLARHALVTLPAGSGVTRILDEWLLARGIDSPRHITCNNWFAVAGMLREGVGIGF
CCCHHHHHHHHHEEECCCCCHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHCCCCCC
LPTAWETSRAGGALVRLTSQPALSPLHYAFQWRRGDLRATIPAMLALVRQHVAFDVPLA
CCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA