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The map label for this gene is skp [H]

Identifier: 161524439

GI number: 161524439

Start: 1396628

End: 1397155

Strand: Direct

Name: skp [H]

Synonym: Bmul_1266

Alternate gene names: 161524439

Gene position: 1396628-1397155 (Clockwise)

Preceding gene: 161524438

Following gene: 161524440

Centisome position: 40.5

GC content: 64.39

Gene sequence:

>528_bases
TTGCTAACCGGTAAGTTTTCGAAACGAGTGATGTGCGCGTTGACCGTCGCGCTGGCGCTGGGCGCCGCGACGGCGCACGC
ACAGGACGTCGCCCGCATTGCGGCGGTCAATTCGGATCGGATCCTGCGCGAGTCGGCGCCTGCCAAGGCGGCGCAGACGA
AGCTCGAAGCCGAGTTCGCGAAGCGCGACAAGGATCTGCAGGACATGGCGGCACGCCTGAAGTCGATGTCCGACTCGCTC
GACAGGAACGGCGCGTCGCTGTCGGCGGCCGATCGCGCGCAGAAGCAGCGCGATCTCGCCCAGCTCGACACCGACTTCCA
GCGCAAGCAGCGCGAGTTCCGCGAAGACCTGAACCAGCGTCGCAACGAGGAACTGGCCGCGGTGCTGGACAAGGCGAACA
AGGTGATCAAGCAGATCGCCGAGCAGCAGAATTACGATCTGATCGTGCAGGAAGCCGTGTACGTCAGCCCGCGCATCGAC
ATCACCGACAAGGTGCTCAAGGCACTCGCGTCCGGCTCGACGAACTGA

Upstream 100 bases:

>100_bases
CCGCTGCAGAAACACGAAGGCGACCAGTACCAGAAATTCCAGTTCCAGATCGGGACGGCGTTCTGATCGAACGCATGACA
ACAGCAACGAGAGGGTAATT

Downstream 100 bases:

>100_bases
CGGAGCAGACGACGAATGGCATTGACGCTTGAGGAACTCGTAAAGCGGTTCGGCGGCGAGATCGCCGGCGACGCGCAATG
CAAGGTCGCCGGCCTCGCGC

Product: outer membrane chaperone Skp

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MLTGKFSKRVMCALTVALALGAATAHAQDVARIAAVNSDRILRESAPAKAAQTKLEAEFAKRDKDLQDMAARLKSMSDSL
DRNGASLSAADRAQKQRDLAQLDTDFQRKQREFREDLNQRRNEELAAVLDKANKVIKQIAEQQNYDLIVQEAVYVSPRID
ITDKVLKALASGSTN

Sequences:

>Translated_175_residues
MLTGKFSKRVMCALTVALALGAATAHAQDVARIAAVNSDRILRESAPAKAAQTKLEAEFAKRDKDLQDMAARLKSMSDSL
DRNGASLSAADRAQKQRDLAQLDTDFQRKQREFREDLNQRRNEELAAVLDKANKVIKQIAEQQNYDLIVQEAVYVSPRID
ITDKVLKALASGSTN
>Mature_175_residues
MLTGKFSKRVMCALTVALALGAATAHAQDVARIAAVNSDRILRESAPAKAAQTKLEAEFAKRDKDLQDMAARLKSMSDSL
DRNGASLSAADRAQKQRDLAQLDTDFQRKQREFREDLNQRRNEELAAVLDKANKVIKQIAEQQNYDLIVQEAVYVSPRID
ITDKVLKALASGSTN

Specific function: Molecular chaperone that interacts specifically with outer membrane proteins, thus maintaining the solubility of early folding intermediates during passage through the periplasm [H]

COG id: COG2825

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the skp family [H]

Homologues:

None

Paralogues:

None

Copy number: 580 Molecules/Cell In: Growth-Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005632 [H]

Pfam domain/function: PF03938 OmpH [H]

EC number: NA

Molecular weight: Translated: 19344; Mature: 19344

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTGKFSKRVMCALTVALALGAATAHAQDVARIAAVNSDRILRESAPAKAAQTKLEAEFA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHH
KRDKDLQDMAARLKSMSDSLDRNGASLSAADRAQKQRDLAQLDTDFQRKQREFREDLNQR
HCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
RNEELAAVLDKANKVIKQIAEQQNYDLIVQEAVYVSPRIDITDKVLKALASGSTN
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLTGKFSKRVMCALTVALALGAATAHAQDVARIAAVNSDRILRESAPAKAAQTKLEAEFA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHH
KRDKDLQDMAARLKSMSDSLDRNGASLSAADRAQKQRDLAQLDTDFQRKQREFREDLNQR
HCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
RNEELAAVLDKANKVIKQIAEQQNYDLIVQEAVYVSPRIDITDKVLKALASGSTN
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12886019 [H]