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The map label for this gene is yeaM [H]

Identifier: 161524395

GI number: 161524395

Start: 1344143

End: 1345021

Strand: Reverse

Name: yeaM [H]

Synonym: Bmul_1222

Alternate gene names: 161524395

Gene position: 1345021-1344143 (Counterclockwise)

Preceding gene: 161524398

Following gene: 161524392

Centisome position: 39.0

GC content: 69.62

Gene sequence:

>879_bases
ATGCATCCGATCGTCCCGGCCGACGCGTCGAATCCGTACGACGTCATCGACATTCCGCCCGAGTTCGCGCCGACGCGCGC
GCACCCGATGCGCGTGCGCGCGCGCCACGTCGCGGCGGGCAGCCGCATTCCGCTGCACACGCATGCGTGGGCACAGCTCG
CGTACGCGTCGCGCGGCGTGCTGCGCGTCGCGACGACCGGCACGACGTGGATGGTGCCGCCGTCCCGCGCGATCTGGGTG
CCGCCGCACGTCACGCACGAAGTCGCGATCGTCGAAGAGGCGTACCTGCGCACGCTCTATATCGACGAGTCGATCGTGCC
GGACGGGCTCGCCGCGTGCCGCGTGGTCGAAGTGACGGGATTGCTGCGCGAGCTGATCGTCGCACTGGACGCACGCGACC
TCAGCGACGGACGCGAGCGCCTGCTGTGCGGGCTCGTGCTCGACGAACTGAGCCGCGCGGAGCCGTTGCCGCTCGCGGTG
CCGATGCCCGACGAAAAGCGGCTGCGGACGCTTTGCGAATCGGTGCTCGCGCAACCGGCAAATGCAGAATCGCTCGAACA
CTGGGCGAGCGAGGTCGGTGCGAGCACGCGTACGATCTCGCGGCTCTTCAAGCAGGAACTCGGCGTGAGCTTCTCGCAAT
GGCGGCAGCAGGCGCTGCTGGCGCGTGCGATTCCGTTGCTGAATCAGGGGCGCCCGCTCTCGCATATCGCGCGCGAGCTC
GGCTACCAGAGCCAGAGCGCGTTCTCGGCGATGTTCCGGCGCGCGTTCGGCGAAAGCCCGCGTGCCTTCATGCTGCGCGG
ATACGAGCACCGCGGCACCGAGCGCGTCGCACCGAGCGACGACATGCGCGACGACGACGCGCACGATACGGCGCGCTGA

Upstream 100 bases:

>100_bases
TCATTGAAACGCTGCATTATCGACCCAAAAGCCGCCGCCTGCGCTTGCATGGCCCCTTCTACAATAACGGCATCGCCCGC
CGCTCCAGTCCGAACCGCTC

Downstream 100 bases:

>100_bases
GCCTGCGCGTCAGACCGGCCGCACCATGTGACGGATCGAGCCGAGCTGCGCGAGGCGCGGCCCCGTCACCTGATAACCCA
TGCGGCGGTACAGACGCGCG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MHPIVPADASNPYDVIDIPPEFAPTRAHPMRVRARHVAAGSRIPLHTHAWAQLAYASRGVLRVATTGTTWMVPPSRAIWV
PPHVTHEVAIVEEAYLRTLYIDESIVPDGLAACRVVEVTGLLRELIVALDARDLSDGRERLLCGLVLDELSRAEPLPLAV
PMPDEKRLRTLCESVLAQPANAESLEHWASEVGASTRTISRLFKQELGVSFSQWRQQALLARAIPLLNQGRPLSHIAREL
GYQSQSAFSAMFRRAFGESPRAFMLRGYEHRGTERVAPSDDMRDDDAHDTAR

Sequences:

>Translated_292_residues
MHPIVPADASNPYDVIDIPPEFAPTRAHPMRVRARHVAAGSRIPLHTHAWAQLAYASRGVLRVATTGTTWMVPPSRAIWV
PPHVTHEVAIVEEAYLRTLYIDESIVPDGLAACRVVEVTGLLRELIVALDARDLSDGRERLLCGLVLDELSRAEPLPLAV
PMPDEKRLRTLCESVLAQPANAESLEHWASEVGASTRTISRLFKQELGVSFSQWRQQALLARAIPLLNQGRPLSHIAREL
GYQSQSAFSAMFRRAFGESPRAFMLRGYEHRGTERVAPSDDMRDDDAHDTAR
>Mature_292_residues
MHPIVPADASNPYDVIDIPPEFAPTRAHPMRVRARHVAAGSRIPLHTHAWAQLAYASRGVLRVATTGTTWMVPPSRAIWV
PPHVTHEVAIVEEAYLRTLYIDESIVPDGLAACRVVEVTGLLRELIVALDARDLSDGRERLLCGLVLDELSRAEPLPLAV
PMPDEKRLRTLCESVLAQPANAESLEHWASEVGASTRTISRLFKQELGVSFSQWRQQALLARAIPLLNQGRPLSHIAREL
GYQSQSAFSAMFRRAFGESPRAFMLRGYEHRGTERVAPSDDMRDDDAHDTAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=226, Percent_Identity=33.1858407079646, Blast_Score=124, Evalue=7e-30,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 32481; Mature: 32481

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHPIVPADASNPYDVIDIPPEFAPTRAHPMRVRARHVAAGSRIPLHTHAWAQLAYASRGV
CCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCE
LRVATTGTTWMVPPSRAIWVPPHVTHEVAIVEEAYLRTLYIDESIVPDGLAACRVVEVTG
EEEEECCCEEEECCCCEEECCCCCCHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHH
LLRELIVALDARDLSDGRERLLCGLVLDELSRAEPLPLAVPMPDEKRLRTLCESVLAQPA
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHCCCC
NAESLEHWASEVGASTRTISRLFKQELGVSFSQWRQQALLARAIPLLNQGRPLSHIAREL
CHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
GYQSQSAFSAMFRRAFGESPRAFMLRGYEHRGTERVAPSDDMRDDDAHDTAR
CCCCHHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MHPIVPADASNPYDVIDIPPEFAPTRAHPMRVRARHVAAGSRIPLHTHAWAQLAYASRGV
CCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCE
LRVATTGTTWMVPPSRAIWVPPHVTHEVAIVEEAYLRTLYIDESIVPDGLAACRVVEVTG
EEEEECCCEEEECCCCEEECCCCCCHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHH
LLRELIVALDARDLSDGRERLLCGLVLDELSRAEPLPLAVPMPDEKRLRTLCESVLAQPA
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHCCCC
NAESLEHWASEVGASTRTISRLFKQELGVSFSQWRQQALLARAIPLLNQGRPLSHIAREL
CHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
GYQSQSAFSAMFRRAFGESPRAFMLRGYEHRGTERVAPSDDMRDDDAHDTAR
CCCCHHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]