Click here to switch to the map view.

The map label for this gene is recJ [H]

Identifier: 161524329

GI number: 161524329

Start: 1270852

End: 1272549

Strand: Reverse

Name: recJ [H]

Synonym: Bmul_1154

Alternate gene names: 161524329

Gene position: 1272549-1270852 (Counterclockwise)

Preceding gene: 161524330

Following gene: 161524328

Centisome position: 36.9

GC content: 71.67

Gene sequence:

>1698_bases
ATGACCCGCATCGTTACCCGCCCCGTCGCGCCCGCCGACGCCGAAGCGCTCGCGCGCCACGGCCTGCATCCGGTGCTCGC
GCGCCTGTACGCGTCGCGCGGCGTGCAATCGCCCGCCGACATCGAGACGGCGCTCGCGCGCCTCGTCCCGCCGACCGAAC
TGAAAGGCTGCGCCGACGCCGCCGCGCTGCTCGCCGACGCGATCGCCGAGAAGCGGCGCCTGCTCGTCGTCGCCGACTAC
GACTGCGACGGCGCGACCGCCTGCGCGGTGGCGGTGCGCGGGCTGCGCATGTTCGGCGCGCAGATCGACTACCTGGTGCC
GAACCGCTTCGAATACGGCTACGGACTCACGCCCGAGATCGTCGAGCTGGCCGCCGCGCGCAAGCCCGACCTGCTGATCA
CCGTCGACAACGGCATCGCGAGCGTCGCCGGCGTCGAAGCGGCGAACGCACGCGGCATCGACGTGCTCGTCACCGACCAC
CACCTGCCCGGCGACGCACTGCCGCCCGCGCGCGCAATCGTGAACCCGAACCAGCCCGGCTGCGCGTTTCCGAGCAAGCA
CATCGCGGGCGTCGGCGTGATGTTCTACGTGCTGCTCGCGCTGCGCGCCGAGCTGCGCCGCCGCGGCGCATTCGCGAGCA
AGGCCGCCGAGCCGCGCCTCGACGGGCTGCTCGACCTCGTCGCGCTCGGCACCGTCGCCGACGTCGTGCGGCTCGACGGC
AACAACCGCGTGCTCGTCGCGCAGGGGCTGCAGCGCATCCGCAACGGCCGCATGCAGCCGGGCATCGCCGCGCTGTTCCG
CGCGGCGGGCCGCGACGCACGCACCGCGTCGGGCTTCGATCTCGGCTTCGGCCTCGGCCCGCGGCTGAACGCGGCCGGCC
GGCTGTCCGACATGTCGCTCGGCATCGAATGCCTCATCACCGACGACATCGGCCGCGCCTGGGCGCTCGCGCAGCAGCTC
GACACGATGAACCGCGAACGGCGCGAGATCGAGGCCGGCATGCAGCAGCAGGCGCTCGCCGATCTCGCCGACGTCGATCC
GGCCGATGCGTGCTCGATCACGCTGTTCAATCCCAAATGGCACCAGGGCGTGATCGGCATCGTCGCCGGCCGGCTCAAGG
AGAAGTTCCACCGCCCGTCGTTCACGTTCGCGCACGCGGACGAGCACGGCACGCGCGTGAAGGGCTCCGGACGATCGATT
CCAGGCTTCCATCTGCGCGATGCGCTCGACCTCGTCTCGAAGCGCGAGCCGGACCTGCTCGTCGCGTTCGGCGGCCACGC
GATGGCGGCCGGCGTCACGCTCGACACCGACAACGTGCCGCGCTTCGCTGCCGCGTTCGAGGCCGTCGCGCGCGAATGGC
TGTCCGACGACGCACTCGCGCGCGTGATCGAGACCGACGGCGAGCTCGAGGACGCGTACTTCACGCCGCAGTTCGTCGGC
CTGCTCGACGAGGCGGTCTGGGGCCAGGGCTTTCCGGCCCCGCTTTTCTCGGGCGAGTTCGACGTCGTGTCGCAAAGCCT
CGTGAAGGACAAGCACCTGAAGCTGCAGCTCGCGCGCGGGCGCCAGCGCTTCAACGCGATCTGGTTCAACCGCACCGAGC
CGCTGCCGGCGAGCGCGCTGCTCGCGTATCGGCTCGTCGCCGACACCTGGAACGGCGTCACACGCGTGCAGCTGATCGTC
GAGCACGCGAGCGCGTGA

Upstream 100 bases:

>100_bases
CGAGCTCGGCCACGCTGCGCGCGACGCGCGGCGCCTTGCGCAAGTTCTGGCGCCGCCGCGCGCTCGCCTCCCTGTTCGAA
TAAGCTCCACCCGATACCGA

Downstream 100 bases:

>100_bases
CGGGCGCCGCCGCCTGGCGCGATGCCGCGCCGGACGGGCCCGCCGCGGCCGCCTGCATTCGATCGGCGCCACCGGGAGCC
TCTGCCGATCGGCTATAATT

Product: single-stranded-DNA-specific exonuclease RecJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 565; Mature: 564

Protein sequence:

>565_residues
MTRIVTRPVAPADAEALARHGLHPVLARLYASRGVQSPADIETALARLVPPTELKGCADAAALLADAIAEKRRLLVVADY
DCDGATACAVAVRGLRMFGAQIDYLVPNRFEYGYGLTPEIVELAAARKPDLLITVDNGIASVAGVEAANARGIDVLVTDH
HLPGDALPPARAIVNPNQPGCAFPSKHIAGVGVMFYVLLALRAELRRRGAFASKAAEPRLDGLLDLVALGTVADVVRLDG
NNRVLVAQGLQRIRNGRMQPGIAALFRAAGRDARTASGFDLGFGLGPRLNAAGRLSDMSLGIECLITDDIGRAWALAQQL
DTMNRERREIEAGMQQQALADLADVDPADACSITLFNPKWHQGVIGIVAGRLKEKFHRPSFTFAHADEHGTRVKGSGRSI
PGFHLRDALDLVSKREPDLLVAFGGHAMAAGVTLDTDNVPRFAAAFEAVAREWLSDDALARVIETDGELEDAYFTPQFVG
LLDEAVWGQGFPAPLFSGEFDVVSQSLVKDKHLKLQLARGRQRFNAIWFNRTEPLPASALLAYRLVADTWNGVTRVQLIV
EHASA

Sequences:

>Translated_565_residues
MTRIVTRPVAPADAEALARHGLHPVLARLYASRGVQSPADIETALARLVPPTELKGCADAAALLADAIAEKRRLLVVADY
DCDGATACAVAVRGLRMFGAQIDYLVPNRFEYGYGLTPEIVELAAARKPDLLITVDNGIASVAGVEAANARGIDVLVTDH
HLPGDALPPARAIVNPNQPGCAFPSKHIAGVGVMFYVLLALRAELRRRGAFASKAAEPRLDGLLDLVALGTVADVVRLDG
NNRVLVAQGLQRIRNGRMQPGIAALFRAAGRDARTASGFDLGFGLGPRLNAAGRLSDMSLGIECLITDDIGRAWALAQQL
DTMNRERREIEAGMQQQALADLADVDPADACSITLFNPKWHQGVIGIVAGRLKEKFHRPSFTFAHADEHGTRVKGSGRSI
PGFHLRDALDLVSKREPDLLVAFGGHAMAAGVTLDTDNVPRFAAAFEAVAREWLSDDALARVIETDGELEDAYFTPQFVG
LLDEAVWGQGFPAPLFSGEFDVVSQSLVKDKHLKLQLARGRQRFNAIWFNRTEPLPASALLAYRLVADTWNGVTRVQLIV
EHASA
>Mature_564_residues
TRIVTRPVAPADAEALARHGLHPVLARLYASRGVQSPADIETALARLVPPTELKGCADAAALLADAIAEKRRLLVVADYD
CDGATACAVAVRGLRMFGAQIDYLVPNRFEYGYGLTPEIVELAAARKPDLLITVDNGIASVAGVEAANARGIDVLVTDHH
LPGDALPPARAIVNPNQPGCAFPSKHIAGVGVMFYVLLALRAELRRRGAFASKAAEPRLDGLLDLVALGTVADVVRLDGN
NRVLVAQGLQRIRNGRMQPGIAALFRAAGRDARTASGFDLGFGLGPRLNAAGRLSDMSLGIECLITDDIGRAWALAQQLD
TMNRERREIEAGMQQQALADLADVDPADACSITLFNPKWHQGVIGIVAGRLKEKFHRPSFTFAHADEHGTRVKGSGRSIP
GFHLRDALDLVSKREPDLLVAFGGHAMAAGVTLDTDNVPRFAAAFEAVAREWLSDDALARVIETDGELEDAYFTPQFVGL
LDEAVWGQGFPAPLFSGEFDVVSQSLVKDKHLKLQLARGRQRFNAIWFNRTEPLPASALLAYRLVADTWNGVTRVQLIVE
HASA

Specific function: Single-stranded-DNA-specific exonuclease. Required for many types of recombinational events, although the stringency of the requirement for recJ appears to vary with the type of recombinational event monitored and the other recombination gene products whi

COG id: COG0608

COG function: function code L; Single-stranded DNA-specific exonuclease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recJ family [H]

Homologues:

Organism=Escherichia coli, GI1789259, Length=554, Percent_Identity=48.9169675090253, Blast_Score=489, Evalue=1e-139,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003156
- InterPro:   IPR001667
- InterPro:   IPR004610 [H]

Pfam domain/function: PF01368 DHH; PF02272 DHHA1 [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 60755; Mature: 60624

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRIVTRPVAPADAEALARHGLHPVLARLYASRGVQSPADIETALARLVPPTELKGCADA
CCCEECCCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHH
AALLADAIAEKRRLLVVADYDCDGATACAVAVRGLRMFGAQIDYLVPNRFEYGYGLTPEI
HHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHCCEECEECCCCCCCCCCCCHHH
VELAAARKPDLLITVDNGIASVAGVEAANARGIDVLVTDHHLPGDALPPARAIVNPNQPG
HHHHHCCCCCEEEEECCCCHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCHHEECCCCCC
CAFPSKHIAGVGVMFYVLLALRAELRRRGAFASKAAEPRLDGLLDLVALGTVADVVRLDG
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHEECC
NNRVLVAQGLQRIRNGRMQPGIAALFRAAGRDARTASGFDLGFGLGPRLNAAGRLSDMSL
CCEEEHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GIECLITDDIGRAWALAQQLDTMNRERREIEAGMQQQALADLADVDPADACSITLFNPKW
CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCH
HQGVIGIVAGRLKEKFHRPSFTFAHADEHGTRVKGSGRSIPGFHLRDALDLVSKREPDLL
HCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCCEE
VAFGGHAMAAGVTLDTDNVPRFAAAFEAVAREWLSDDALARVIETDGELEDAYFTPQFVG
EEECCCEEEECEEECCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHH
LLDEAVWGQGFPAPLFSGEFDVVSQSLVKDKHLKLQLARGRQRFNAIWFNRTEPLPASAL
HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHEEHHHHHHHHHHEEEECCCCCCCHHHH
LAYRLVADTWNGVTRVQLIVEHASA
HHHHHHHHCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
TRIVTRPVAPADAEALARHGLHPVLARLYASRGVQSPADIETALARLVPPTELKGCADA
CCEECCCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHH
AALLADAIAEKRRLLVVADYDCDGATACAVAVRGLRMFGAQIDYLVPNRFEYGYGLTPEI
HHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHCCEECEECCCCCCCCCCCCHHH
VELAAARKPDLLITVDNGIASVAGVEAANARGIDVLVTDHHLPGDALPPARAIVNPNQPG
HHHHHCCCCCEEEEECCCCHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCHHEECCCCCC
CAFPSKHIAGVGVMFYVLLALRAELRRRGAFASKAAEPRLDGLLDLVALGTVADVVRLDG
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHEECC
NNRVLVAQGLQRIRNGRMQPGIAALFRAAGRDARTASGFDLGFGLGPRLNAAGRLSDMSL
CCEEEHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GIECLITDDIGRAWALAQQLDTMNRERREIEAGMQQQALADLADVDPADACSITLFNPKW
CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCH
HQGVIGIVAGRLKEKFHRPSFTFAHADEHGTRVKGSGRSIPGFHLRDALDLVSKREPDLL
HCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCCEE
VAFGGHAMAAGVTLDTDNVPRFAAAFEAVAREWLSDDALARVIETDGELEDAYFTPQFVG
EEECCCEEEECEEECCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCHHHHH
LLDEAVWGQGFPAPLFSGEFDVVSQSLVKDKHLKLQLARGRQRFNAIWFNRTEPLPASAL
HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHEEHHHHHHHHHHEEEECCCCCCCHHHH
LAYRLVADTWNGVTRVQLIVEHASA
HHHHHHHHCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on ester bonds [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8168497 [H]