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The map label for this gene is yfdE [H]

Identifier: 161524287

GI number: 161524287

Start: 1217336

End: 1218592

Strand: Direct

Name: yfdE [H]

Synonym: Bmul_1112

Alternate gene names: 161524287

Gene position: 1217336-1218592 (Clockwise)

Preceding gene: 161524286

Following gene: 161524288

Centisome position: 35.3

GC content: 72.08

Gene sequence:

>1257_bases
ATGAACGCTTCGCGTGGCGCACTGGACGGCCTGAAGGTCGTCGACCTGAGCCGCGTGCTCGGCGGCCCGTACTGCACGCA
GGCGCTCGCCGACCACGGTGCGACGGTCATCAAGATCGAACCGCCCGGCGGCGACGAGACGCGCGGCTGGGGGCCGCCGT
TCGCGGGCGACACCGCGTGGTACTTCTTGGGCGTGAACCGCAACAAGGAAGGGCTCGCGCTCGACCTGTCGCGCGACGAA
GGGCGCGCGATCCTCTGGCGGCTGCTCGAGGACGCCGACGTGCTGGTCGAGAACTTCAAGCCCGGTACGCTCGCGCGCTG
GGGGATGGACTATGCGCGCGACCTGCAGCCGCGTTTCCCGAGGCTGATCCACTGTGCGGTGACGGGTTTCGGCGCCGACG
GCCCGCTTGGCGGCTTGCCGGGCTACGACGCGGTGATCCAGGCGATGGCGGGGCTGATGAGCGTGAACGGCGAGCGCGAC
GGCGACGCGACGCGCATCGGCTTGCCGATCGTCGACATGGTGACGGGCCTCAACGCGCTCGCCGGCATCCTGCTCGCGCT
CGCCGAGCGCGAGAAGAGCGGGCGCGGTCAGTCGGTCGACATCGCGTTGTACGACTGCGGCGTGTCGCTGCTGCATCCGC
ATCTGCCGAATTTCTTCGGCTCGGCGCGCGTGCCCGAGCGCAGCGGCAACGCGCATCCGAACATCGCGCCGTACGACAGC
TATCGGACGGCGACCGTCCCGATCTTTCTCGCGGTCGGCAACGATCGGCAGTTCGCGCGGCTCGTCGCGCATCTCGGCGT
ACCGGCGCTGGCCGACGATCCGCGCTTCGTCGACAACCGCAGCCGCTGCGCGCACCGCGCGGAATTGAAGGCCGCGCTCG
AGGCGCGGCTCGCCGCGCACGCGTGCGAACCGCTCGCGCGCGACCTGATGGCCGCGGGCGTGCCGTGCGGGCCCGTGCGT
ACGGTCGCCGACGTCGCGTGCGATCCGCATGCGCTGCACCGCAACCTGTTCGTCGAGATCGGCGCGTATCGCGGCACCGC
CTCGCCGGTGAAGCTCTCGCGCACGCCGGCCACCTATCGGCGGCCGCCGCCCGCGCTCGGCAGCGATACGCGCGCGGTGC
TCGATCGCCTCGGCGTCGACCCGGCGCTGCAGCAGCAACTGTTCGATGCCGGCGTGCTGAAGGACGCGTCCGACGAGCAA
GCGGCCGGCGGCGAGGTGAGCGCCGAACGCGCCGCCGGCCGCGAGCCGCCCGGCTGA

Upstream 100 bases:

>100_bases
CGGCGTCGCGCGACGACGAAGCCGCGGCCTTCGACGCCTTGCTGCGCGGCGCGCCGGTGTCGCTCGACGTCGCGCTCGAC
CTGCTGCCGGAGGTCGAGCG

Downstream 100 bases:

>100_bases
CGAACTGCCGCCGGCCGGCGGCAATCCCGGCCGCACGGACGGCGCGCCGCGTCGCGCCGCCGACAACAAACATGGAGACA
TCGATGAGCGGTCCGCACAC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 418; Mature: 418

Protein sequence:

>418_residues
MNASRGALDGLKVVDLSRVLGGPYCTQALADHGATVIKIEPPGGDETRGWGPPFAGDTAWYFLGVNRNKEGLALDLSRDE
GRAILWRLLEDADVLVENFKPGTLARWGMDYARDLQPRFPRLIHCAVTGFGADGPLGGLPGYDAVIQAMAGLMSVNGERD
GDATRIGLPIVDMVTGLNALAGILLALAEREKSGRGQSVDIALYDCGVSLLHPHLPNFFGSARVPERSGNAHPNIAPYDS
YRTATVPIFLAVGNDRQFARLVAHLGVPALADDPRFVDNRSRCAHRAELKAALEARLAAHACEPLARDLMAAGVPCGPVR
TVADVACDPHALHRNLFVEIGAYRGTASPVKLSRTPATYRRPPPALGSDTRAVLDRLGVDPALQQQLFDAGVLKDASDEQ
AAGGEVSAERAAGREPPG

Sequences:

>Translated_418_residues
MNASRGALDGLKVVDLSRVLGGPYCTQALADHGATVIKIEPPGGDETRGWGPPFAGDTAWYFLGVNRNKEGLALDLSRDE
GRAILWRLLEDADVLVENFKPGTLARWGMDYARDLQPRFPRLIHCAVTGFGADGPLGGLPGYDAVIQAMAGLMSVNGERD
GDATRIGLPIVDMVTGLNALAGILLALAEREKSGRGQSVDIALYDCGVSLLHPHLPNFFGSARVPERSGNAHPNIAPYDS
YRTATVPIFLAVGNDRQFARLVAHLGVPALADDPRFVDNRSRCAHRAELKAALEARLAAHACEPLARDLMAAGVPCGPVR
TVADVACDPHALHRNLFVEIGAYRGTASPVKLSRTPATYRRPPPALGSDTRAVLDRLGVDPALQQQLFDAGVLKDASDEQ
AAGGEVSAERAAGREPPG
>Mature_418_residues
MNASRGALDGLKVVDLSRVLGGPYCTQALADHGATVIKIEPPGGDETRGWGPPFAGDTAWYFLGVNRNKEGLALDLSRDE
GRAILWRLLEDADVLVENFKPGTLARWGMDYARDLQPRFPRLIHCAVTGFGADGPLGGLPGYDAVIQAMAGLMSVNGERD
GDATRIGLPIVDMVTGLNALAGILLALAEREKSGRGQSVDIALYDCGVSLLHPHLPNFFGSARVPERSGNAHPNIAPYDS
YRTATVPIFLAVGNDRQFARLVAHLGVPALADDPRFVDNRSRCAHRAELKAALEARLAAHACEPLARDLMAAGVPCGPVR
TVADVACDPHALHRNLFVEIGAYRGTASPVKLSRTPATYRRPPPALGSDTRAVLDRLGVDPALQQQLFDAGVLKDASDEQ
AAGGEVSAERAAGREPPG

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=393, Percent_Identity=36.3867684478371, Blast_Score=262, Evalue=5e-70,
Organism=Homo sapiens, GI300863124, Length=419, Percent_Identity=34.1288782816229, Blast_Score=248, Evalue=9e-66,
Organism=Homo sapiens, GI13376042, Length=419, Percent_Identity=30.7875894988067, Blast_Score=210, Evalue=2e-54,
Organism=Homo sapiens, GI300863126, Length=393, Percent_Identity=32.5699745547074, Blast_Score=210, Evalue=2e-54,
Organism=Homo sapiens, GI42794625, Length=392, Percent_Identity=29.0816326530612, Blast_Score=106, Evalue=5e-23,
Organism=Homo sapiens, GI266456254, Length=392, Percent_Identity=29.0816326530612, Blast_Score=106, Evalue=5e-23,
Organism=Homo sapiens, GI266458397, Length=263, Percent_Identity=33.4600760456274, Blast_Score=99, Evalue=7e-21,
Organism=Homo sapiens, GI266458393, Length=263, Percent_Identity=33.4600760456274, Blast_Score=99, Evalue=7e-21,
Organism=Homo sapiens, GI266458395, Length=147, Percent_Identity=35.3741496598639, Blast_Score=79, Evalue=6e-15,
Organism=Homo sapiens, GI42822893, Length=147, Percent_Identity=35.3741496598639, Blast_Score=79, Evalue=9e-15,
Organism=Escherichia coli, GI87082093, Length=353, Percent_Identity=40.2266288951841, Blast_Score=271, Evalue=8e-74,
Organism=Escherichia coli, GI1788717, Length=401, Percent_Identity=31.4214463840399, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI1786222, Length=403, Percent_Identity=26.5508684863524, Blast_Score=118, Evalue=7e-28,
Organism=Caenorhabditis elegans, GI32564160, Length=347, Percent_Identity=25.0720461095101, Blast_Score=72, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI115535051, Length=255, Percent_Identity=28.2352941176471, Blast_Score=68, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24648431, Length=382, Percent_Identity=39.7905759162304, Blast_Score=260, Evalue=2e-69,
Organism=Drosophila melanogaster, GI24585488, Length=394, Percent_Identity=28.9340101522843, Blast_Score=99, Evalue=5e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 44388; Mature: 44388

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNASRGALDGLKVVDLSRVLGGPYCTQALADHGATVIKIEPPGGDETRGWGPPFAGDTAW
CCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCEE
YFLGVNRNKEGLALDLSRDEGRAILWRLLEDADVLVENFKPGTLARWGMDYARDLQPRFP
EEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHCCCCHH
RLIHCAVTGFGADGPLGGLPGYDAVIQAMAGLMSVNGERDGDATRIGLPIVDMVTGLNAL
HEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHH
AGILLALAEREKSGRGQSVDIALYDCGVSLLHPHLPNFFGSARVPERSGNAHPNIAPYDS
HHHHHHHHHHHHCCCCCEEEEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
YRTATVPIFLAVGNDRQFARLVAHLGVPALADDPRFVDNRSRCAHRAELKAALEARLAAH
CCEEEEEEEEEECCCHHHHHHHHHHCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHH
ACEPLARDLMAAGVPCGPVRTVADVACDPHALHRNLFVEIGAYRGTASPVKLSRTPATYR
HHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHEEEEEECCCCCCCCEEECCCCCCCC
RPPPALGSDTRAVLDRLGVDPALQQQLFDAGVLKDASDEQAAGGEVSAERAAGREPPG
CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCC
>Mature Secondary Structure
MNASRGALDGLKVVDLSRVLGGPYCTQALADHGATVIKIEPPGGDETRGWGPPFAGDTAW
CCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCEE
YFLGVNRNKEGLALDLSRDEGRAILWRLLEDADVLVENFKPGTLARWGMDYARDLQPRFP
EEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHCCCCHH
RLIHCAVTGFGADGPLGGLPGYDAVIQAMAGLMSVNGERDGDATRIGLPIVDMVTGLNAL
HEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHH
AGILLALAEREKSGRGQSVDIALYDCGVSLLHPHLPNFFGSARVPERSGNAHPNIAPYDS
HHHHHHHHHHHHCCCCCEEEEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
YRTATVPIFLAVGNDRQFARLVAHLGVPALADDPRFVDNRSRCAHRAELKAALEARLAAH
CCEEEEEEEEEECCCHHHHHHHHHHCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHH
ACEPLARDLMAAGVPCGPVRTVADVACDPHALHRNLFVEIGAYRGTASPVKLSRTPATYR
HHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHEEEEEECCCCCCCCEEECCCCCCCC
RPPPALGSDTRAVLDRLGVDPALQQQLFDAGVLKDASDEQAAGGEVSAERAAGREPPG
CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]