Click here to switch to the map view.

The map label for this gene is ydjR [C]

Identifier: 161524276

GI number: 161524276

Start: 1204969

End: 1205622

Strand: Direct

Name: ydjR [C]

Synonym: Bmul_1101

Alternate gene names: 161524276

Gene position: 1204969-1205622 (Clockwise)

Preceding gene: 161524275

Following gene: 161524277

Centisome position: 34.94

GC content: 74.31

Gene sequence:

>654_bases
ATGACGGCGCACGACCGCGCGCCGATGGCCGCCGCGCTGATCCGCGCGGCGGATCTCGTTGCGTCGCCGTGGAAGAACGG
CGGCGGCGTGACGCGCGAGATCGCCGCCGGATTCCCCGAAGCGGGCCATGCCGACGCGCCGGGCGCCGCCGCGCCGCGCG
GCGGCGCGCTCGACACGTTCGTGTGGCGCGTGAGCGTCGCCGATGTCGGAGCGGCCGGGCCGTTCTCGCGCTTCGACGGC
GTCGACCGCACGCTCGTGCTGCTGTCCGGCGCCGGGATGACGCTCGCGGAAGCGGGCGGGCGGCGTCACGTGCTCGATGC
GCCGCTCGCGCGTGCCGACTTCGCGGGCGAATCGGCGATCGACGCGACGCTGCACGACGGACCGACGCGCGACTTCAACC
TGATGACGCGTCGCTCGGCCGCGCGCGGCACGCTCGACGTATGGCGCGCGGGCACGCATCGCGTTGCGCACGCCGACACC
GTGCTGCTGTTCTGTGCGGCGGGCGCCGTCGAGGTTGCGCTCGACGACGCGCGCTTCGCCCTGGAAGAAATGGACACGTT
GCGGCTCGACGGGCCGCCGCGTGTGCTTGACGTCGTCGTGAGCGGAGGCGGCGCGCTGCTGGCCGTGTCGCTCGTCGTCG
GCGAACGAGACTGA

Upstream 100 bases:

>100_bases
CGGCGACGGGCGTGATGCGCCACGCGGATGCCGGCTACGAACTCGCGCAGCAGACGGCCCGCGAAGTCGGCCTGAAGCTG
CCGATGCTCGGTCGCTGAGC

Downstream 100 bases:

>100_bases
ACGCATGAAACCGACTGTCTGGCATCACCTGAGGCTGTGTCCGCACGGCCATCCCGACGAAACGATCGACGATGCGGCGA
TCGCCGTCGACGAAACCGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MTAHDRAPMAAALIRAADLVASPWKNGGGVTREIAAGFPEAGHADAPGAAAPRGGALDTFVWRVSVADVGAAGPFSRFDG
VDRTLVLLSGAGMTLAEAGGRRHVLDAPLARADFAGESAIDATLHDGPTRDFNLMTRRSAARGTLDVWRAGTHRVAHADT
VLLFCAAGAVEVALDDARFALEEMDTLRLDGPPRVLDVVVSGGGALLAVSLVVGERD

Sequences:

>Translated_217_residues
MTAHDRAPMAAALIRAADLVASPWKNGGGVTREIAAGFPEAGHADAPGAAAPRGGALDTFVWRVSVADVGAAGPFSRFDG
VDRTLVLLSGAGMTLAEAGGRRHVLDAPLARADFAGESAIDATLHDGPTRDFNLMTRRSAARGTLDVWRAGTHRVAHADT
VLLFCAAGAVEVALDDARFALEEMDTLRLDGPPRVLDVVVSGGGALLAVSLVVGERD
>Mature_216_residues
TAHDRAPMAAALIRAADLVASPWKNGGGVTREIAAGFPEAGHADAPGAAAPRGGALDTFVWRVSVADVGAAGPFSRFDGV
DRTLVLLSGAGMTLAEAGGRRHVLDAPLARADFAGESAIDATLHDGPTRDFNLMTRRSAARGTLDVWRAGTHRVAHADTV
LLFCAAGAVEVALDDARFALEEMDTLRLDGPPRVLDVVVSGGGALLAVSLVVGERD

Specific function: Unknown

COG id: COG3758

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ydjR [H]

Homologues:

Organism=Escherichia coli, GI87081963, Length=125, Percent_Identity=33.6, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR010282 [H]

Pfam domain/function: PF05962 HutD [H]

EC number: NA

Molecular weight: Translated: 22354; Mature: 22223

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAHDRAPMAAALIRAADLVASPWKNGGGVTREIAAGFPEAGHADAPGAAAPRGGALDTF
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEE
VWRVSVADVGAAGPFSRFDGVDRTLVLLSGAGMTLAEAGGRRHVLDAPLARADFAGESAI
EEEEEECCCCCCCCCHHHCCCCEEEEEEECCCCHHHHCCCCCEECCCCCHHHCCCCCCCE
DATLHDGPTRDFNLMTRRSAARGTLDVWRAGTHRVAHADTVLLFCAAGAVEVALDDARFA
EEEECCCCCCCCHHHHHHHHCCCCHHHHHCCCCEEHHHHEEEEEECCCCEEEEECHHHHH
LEEMDTLRLDGPPRVLDVVVSGGGALLAVSLVVGERD
HHHHHHEECCCCCCEEEEEECCCCCEEEEEEEECCCC
>Mature Secondary Structure 
TAHDRAPMAAALIRAADLVASPWKNGGGVTREIAAGFPEAGHADAPGAAAPRGGALDTF
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEE
VWRVSVADVGAAGPFSRFDGVDRTLVLLSGAGMTLAEAGGRRHVLDAPLARADFAGESAI
EEEEEECCCCCCCCCHHHCCCCEEEEEEECCCCHHHHCCCCCEECCCCCHHHCCCCCCCE
DATLHDGPTRDFNLMTRRSAARGTLDVWRAGTHRVAHADTVLLFCAAGAVEVALDDARFA
EEEECCCCCCCCHHHHHHHHCCCCHHHHHCCCCEEHHHHEEEEEECCCCEEEEECHHHHH
LEEMDTLRLDGPPRVLDVVVSGGGALLAVSLVVGERD
HHHHHHEECCCCCCEEEEEECCCCCEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2203753 [H]