Click here to switch to the map view.

The map label for this gene is yhjC [H]

Identifier: 161523821

GI number: 161523821

Start: 701674

End: 702642

Strand: Direct

Name: yhjC [H]

Synonym: Bmul_0641

Alternate gene names: 161523821

Gene position: 701674-702642 (Clockwise)

Preceding gene: 161523820

Following gene: 161523830

Centisome position: 20.35

GC content: 65.43

Gene sequence:

>969_bases
ATGGACCGGATCCAGGCAATGGAAGTTTTCACGCGCGTGGTCGATGCGAATAGCTTCACGCGCGCCGCGGAGACGCTCGC
GATGCCGCGCGCGTCGGTCACGACGATCATCCAGAATCTCGAGGCGTTGCTCGGCGTGCGCCTGATGCACCGGACGACGC
GGCGGCTGTCGCTGACGCCGGAAGGCGCCGCGTACTACGAGCACTGCGTGAAGATTCTGTCGGAAATCGCGGAAGCGGAC
GCGAGTTTCCAGAAGGGCAAGCCGACCGGCGTGCTGCGCGTTCACATGCCGAGTTCGCTCGGACGGCGGCTCGTGATTCC
GTCGCTGTCGCTGTTCCGGCAGCGCTATCCGGACATCACGCTCGATCTGGGACTGTCCGATCGGCCGGTCGATCCGGTCG
AGGAGGGGATCGACTGCATGATTCGCGTGGGGCCGCTCGAGGATTCGTCGATGGTCGCGCGCCGGATCGGGATGCTCAGA
CGCGTGACGTGTGCGGCACCCGACTATCTGGCCCGTCATGGCGAGCCGCGCGAGATCGCCGATCTCGCCGGGCACTACGC
CGTGAACTTCCGTGCGACGCAGGGCGGGCGCGCGGTGCCATGGGTGTTCCTGATCGACGGCAAGCCGGTCGAGGTGCGGA
TGAATGCGAGCGTCACGGTCAACGATTCGGATGCGTACGTGAATTGCGGGCTCGAAGGGTTCGGGATGATCCAGCCGACG
CTGTTCATGGTGGTGTCGAATCTGCTCGACGGGTCGCTGGTCGAGGTGCTGCCGGACTGCAATCCGAAGCCGAAGCCGAT
TTCGATCATGTATCCGCACAACCGGCATCTGTCGGCGAAGGTGCGCGTGTTCGCGGACTGGATCGCGGAGGTGTTCGAGT
CGACGCCGGCGCTTGAAGGCGGCGAGAACTGGCGGCGGAATGTGCGGGCGAAGGTTGAGGGTGAGGCGGCGGGGTCGGTG
GTGGCTTGA

Upstream 100 bases:

>100_bases
GCGGCGCGACTATTCAGGAGACGAGAACAATGGAGCGGGGCTTGTGCCGCGCCGTCCGGCGGCTCTATCCTGTCCCGTTG
GCGATTCGAAGGGGAGCGGC

Downstream 100 bases:

>100_bases
GTTGAGCGGGGGGCGTCGGGCGTGTTCGGGCGGGAGGGCGCGCTGCGCAGCCGATGCAATGAAAAAGCCGCTGAACCTTT
CGGAACAGCGGCCTTTTTTC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MDRIQAMEVFTRVVDANSFTRAAETLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYYEHCVKILSEIAEAD
ASFQKGKPTGVLRVHMPSSLGRRLVIPSLSLFRQRYPDITLDLGLSDRPVDPVEEGIDCMIRVGPLEDSSMVARRIGMLR
RVTCAAPDYLARHGEPREIADLAGHYAVNFRATQGGRAVPWVFLIDGKPVEVRMNASVTVNDSDAYVNCGLEGFGMIQPT
LFMVVSNLLDGSLVEVLPDCNPKPKPISIMYPHNRHLSAKVRVFADWIAEVFESTPALEGGENWRRNVRAKVEGEAAGSV
VA

Sequences:

>Translated_322_residues
MDRIQAMEVFTRVVDANSFTRAAETLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYYEHCVKILSEIAEAD
ASFQKGKPTGVLRVHMPSSLGRRLVIPSLSLFRQRYPDITLDLGLSDRPVDPVEEGIDCMIRVGPLEDSSMVARRIGMLR
RVTCAAPDYLARHGEPREIADLAGHYAVNFRATQGGRAVPWVFLIDGKPVEVRMNASVTVNDSDAYVNCGLEGFGMIQPT
LFMVVSNLLDGSLVEVLPDCNPKPKPISIMYPHNRHLSAKVRVFADWIAEVFESTPALEGGENWRRNVRAKVEGEAAGSV
VA
>Mature_322_residues
MDRIQAMEVFTRVVDANSFTRAAETLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYYEHCVKILSEIAEAD
ASFQKGKPTGVLRVHMPSSLGRRLVIPSLSLFRQRYPDITLDLGLSDRPVDPVEEGIDCMIRVGPLEDSSMVARRIGMLR
RVTCAAPDYLARHGEPREIADLAGHYAVNFRATQGGRAVPWVFLIDGKPVEVRMNASVTVNDSDAYVNCGLEGFGMIQPT
LFMVVSNLLDGSLVEVLPDCNPKPKPISIMYPHNRHLSAKVRVFADWIAEVFESTPALEGGENWRRNVRAKVEGEAAGSV
VA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=295, Percent_Identity=38.9830508474576, Blast_Score=218, Evalue=6e-58,
Organism=Escherichia coli, GI1786401, Length=296, Percent_Identity=33.1081081081081, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1789639, Length=296, Percent_Identity=29.7297297297297, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI1787589, Length=288, Percent_Identity=28.125, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI87081978, Length=288, Percent_Identity=30.2083333333333, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1787128, Length=284, Percent_Identity=30.6338028169014, Blast_Score=127, Evalue=7e-31,
Organism=Escherichia coli, GI1789440, Length=285, Percent_Identity=27.719298245614, Blast_Score=125, Evalue=5e-30,
Organism=Escherichia coli, GI1789173, Length=141, Percent_Identity=34.7517730496454, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1788481, Length=291, Percent_Identity=23.0240549828179, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788706, Length=295, Percent_Identity=21.3559322033898, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1786448, Length=289, Percent_Identity=21.1072664359862, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787806, Length=154, Percent_Identity=30.5194805194805, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35510; Mature: 35510

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRIQAMEVFTRVVDANSFTRAAETLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTP
CCHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCC
EGAAYYEHCVKILSEIAEADASFQKGKPTGVLRVHMPSSLGRRLVIPSLSLFRQRYPDIT
CCHHHHHHHHHHHHHHHHHCCHHCCCCCCEEEEEECCHHCCCEEECCCHHHHHHHCCCEE
LDLGLSDRPVDPVEEGIDCMIRVGPLEDSSMVARRIGMLRRVTCAAPDYLARHGEPREIA
EECCCCCCCCCHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHH
DLAGHYAVNFRATQGGRAVPWVFLIDGKPVEVRMNASVTVNDSDAYVNCGLEGFGMIQPT
HHCCCEEEEEEECCCCCCCCEEEEECCCEEEEEECCEEEECCCCCEEECCCCCCCCHHHH
LFMVVSNLLDGSLVEVLPDCNPKPKPISIMYPHNRHLSAKVRVFADWIAEVFESTPALEG
HHHHHHHHHCCHHHHHCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
GENWRRNVRAKVEGEAAGSVVA
CHHHHHCCCEEECCCCCCCCCC
>Mature Secondary Structure
MDRIQAMEVFTRVVDANSFTRAAETLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTP
CCHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCC
EGAAYYEHCVKILSEIAEADASFQKGKPTGVLRVHMPSSLGRRLVIPSLSLFRQRYPDIT
CCHHHHHHHHHHHHHHHHHCCHHCCCCCCEEEEEECCHHCCCEEECCCHHHHHHHCCCEE
LDLGLSDRPVDPVEEGIDCMIRVGPLEDSSMVARRIGMLRRVTCAAPDYLARHGEPREIA
EECCCCCCCCCHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHH
DLAGHYAVNFRATQGGRAVPWVFLIDGKPVEVRMNASVTVNDSDAYVNCGLEGFGMIQPT
HHCCCEEEEEEECCCCCCCCEEEEECCCEEEEEECCEEEECCCCCEEECCCCCCCCHHHH
LFMVVSNLLDGSLVEVLPDCNPKPKPISIMYPHNRHLSAKVRVFADWIAEVFESTPALEG
HHHHHHHHHCCHHHHHCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
GENWRRNVRAKVEGEAAGSVVA
CHHHHHCCCEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]