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The map label for this gene is ykgD [C]

Identifier: 161523820

GI number: 161523820

Start: 700555

End: 701523

Strand: Direct

Name: ykgD [C]

Synonym: Bmul_0640

Alternate gene names: 161523820

Gene position: 700555-701523 (Clockwise)

Preceding gene: 161523815

Following gene: 161523821

Centisome position: 20.31

GC content: 71.52

Gene sequence:

>969_bases
ATGTCGTCGCCGCGCCCGATCCTGATCCTCGCGTTTCCGCGCGCGCAATTGCTCGACGTATCGGGGCCGTTGCAGGTGTT
CGCATCCGTCAATGAACTCGCGCTCGAGCGCGGACAGCCGGCGCCCTATGCGCCGCGCATCGTCGCCGCCGACGCGGGGC
CGGTCGAGACGTCGTCGGGCGTCGCGGTGGTCGCCGACTCGCTGCGCTCGACCGCGCGCGGCATCGATACGCTGATCGTC
GCGGGCGGCAAGGGCGTGCATGCGGCTTCGCGAGACGCGCGGCTCGTGCGTTGGGTGCGTCGGCAGGCGGATCGCGCACG
ACGCGTCGCATCGGTCTGCACCGGCGCATTCCTGCTCGCCGAAGCGGGGCTGCTCGACGGGCGTCGCGCCGTCACGCACT
GGACGCGCTGCGACGAGCTTGCCGCGCGCTATCCGAACGTGCGCGTCGAAGCCGATCCGATCTTTATCCGCGAAGGCGCG
CTGTGGACGTCGGCCGGCGTGACGGCCGGCATCGATCTCGCGCTGGCGCTCGTCGAAGAGGATCTCGGCCGCGCGGTGGC
GCTCGACGTCGCGCGCGAGCTCGTCGTGTTCCTGAAGCGCCCGGGCGGCCAGGCGCAATTCAGCGCGATGTTGTCGATGC
AGCGTACCGACGACCGGTTCGGCGAACTGCATGCGTGGATCGCCGAACATCTGGGCGCCGATCTGTCGGTGCCGGCGCTT
GCCGAGCGCGCGCGGATGAGCGAGCGCAGCTTCGTGCGCCACTATCGCGCGAGCACCGGCCGCACGCCGGCGCGCGCGGT
CGAGCAGATTCGCGTCGAGGCGGCGCAGCGGCTGCTCGGCGAGACCGGCTGGCCGGTCAAGCGGATCGCCGCGCGTTGCG
GATTCGGCTCCGAGGAGACGCTCAGGCGCAGCTTCGTGCGCGTGCTCGGCGTGTCGCCGCAGGAATATCGCGAGCGGTTC
GTGCGCTGA

Upstream 100 bases:

>100_bases
GAAGAGAAGGGCCGCGCCGCGGCGCGGGATGGACAGACCGATTCTAGGCGCGTAGTGTTTGGCGAAATTGCCATATCGCC
CACGTTTTCCGCCAATCGCC

Downstream 100 bases:

>100_bases
GCCGACGCGCGGCATCGAGCCGACGAAAATCGGCGGCGCGATGGGCGAGAGCGGCGCGACTATTCAGGAGACGAGAACAA
TGGAGCGGGGCTTGTGCCGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 322; Mature: 321

Protein sequence:

>322_residues
MSSPRPILILAFPRAQLLDVSGPLQVFASVNELALERGQPAPYAPRIVAADAGPVETSSGVAVVADSLRSTARGIDTLIV
AGGKGVHAASRDARLVRWVRRQADRARRVASVCTGAFLLAEAGLLDGRRAVTHWTRCDELAARYPNVRVEADPIFIREGA
LWTSAGVTAGIDLALALVEEDLGRAVALDVARELVVFLKRPGGQAQFSAMLSMQRTDDRFGELHAWIAEHLGADLSVPAL
AERARMSERSFVRHYRASTGRTPARAVEQIRVEAAQRLLGETGWPVKRIAARCGFGSEETLRRSFVRVLGVSPQEYRERF
VR

Sequences:

>Translated_322_residues
MSSPRPILILAFPRAQLLDVSGPLQVFASVNELALERGQPAPYAPRIVAADAGPVETSSGVAVVADSLRSTARGIDTLIV
AGGKGVHAASRDARLVRWVRRQADRARRVASVCTGAFLLAEAGLLDGRRAVTHWTRCDELAARYPNVRVEADPIFIREGA
LWTSAGVTAGIDLALALVEEDLGRAVALDVARELVVFLKRPGGQAQFSAMLSMQRTDDRFGELHAWIAEHLGADLSVPAL
AERARMSERSFVRHYRASTGRTPARAVEQIRVEAAQRLLGETGWPVKRIAARCGFGSEETLRRSFVRVLGVSPQEYRERF
VR
>Mature_321_residues
SSPRPILILAFPRAQLLDVSGPLQVFASVNELALERGQPAPYAPRIVAADAGPVETSSGVAVVADSLRSTARGIDTLIVA
GGKGVHAASRDARLVRWVRRQADRARRVASVCTGAFLLAEAGLLDGRRAVTHWTRCDELAARYPNVRVEADPIFIREGAL
WTSAGVTAGIDLALALVEEDLGRAVALDVARELVVFLKRPGGQAQFSAMLSMQRTDDRFGELHAWIAEHLGADLSVPALA
ERARMSERSFVRHYRASTGRTPARAVEQIRVEAAQRLLGETGWPVKRIAARCGFGSEETLRRSFVRVLGVSPQEYRERFV
R

Specific function: Unknown

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase C56 family [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=101, Percent_Identity=34.6534653465347, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI [H]

EC number: NA

Molecular weight: Translated: 35093; Mature: 34961

Theoretical pI: Translated: 10.67; Mature: 10.67

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSPRPILILAFPRAQLLDVSGPLQVFASVNELALERGQPAPYAPRIVAADAGPVETSSG
CCCCCCEEEEECCCHHEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCC
VAVVADSLRSTARGIDTLIVAGGKGVHAASRDARLVRWVRRQADRARRVASVCTGAFLLA
HHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EAGLLDGRRAVTHWTRCDELAARYPNVRVEADPIFIREGALWTSAGVTAGIDLALALVEE
HHCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCEEEECCCEEECCCCHHHHHHHHHHHHH
DLGRAVALDVARELVVFLKRPGGQAQFSAMLSMQRTDDRFGELHAWIAEHLGADLSVPAL
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
AERARMSERSFVRHYRASTGRTPARAVEQIRVEAAQRLLGETGWPVKRIAARCGFGSEET
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHH
LRRSFVRVLGVSPQEYRERFVR
HHHHHHHHHCCCHHHHHHHHCC
>Mature Secondary Structure 
SSPRPILILAFPRAQLLDVSGPLQVFASVNELALERGQPAPYAPRIVAADAGPVETSSG
CCCCCEEEEECCCHHEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCC
VAVVADSLRSTARGIDTLIVAGGKGVHAASRDARLVRWVRRQADRARRVASVCTGAFLLA
HHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EAGLLDGRRAVTHWTRCDELAARYPNVRVEADPIFIREGALWTSAGVTAGIDLALALVEE
HHCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCEEEECCCEEECCCCHHHHHHHHHHHHH
DLGRAVALDVARELVVFLKRPGGQAQFSAMLSMQRTDDRFGELHAWIAEHLGADLSVPAL
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
AERARMSERSFVRHYRASTGRTPARAVEQIRVEAAQRLLGETGWPVKRIAARCGFGSEET
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHH
LRRSFVRVLGVSPQEYRERFVR
HHHHHHHHHCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8157602 [H]