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The map label for this gene is ribB [H]

Identifier: 161523789

GI number: 161523789

Start: 668224

End: 668934

Strand: Direct

Name: ribB [H]

Synonym: Bmul_0609

Alternate gene names: 161523789

Gene position: 668224-668934 (Clockwise)

Preceding gene: 161523788

Following gene: 161523795

Centisome position: 19.38

GC content: 69.06

Gene sequence:

>711_bases
ATGTCCTTGATGTCCCTTTCGTCGGCACCGGCCGACGCCTTTGCCGATCTCCCGTTGCTCGATGCCGAACCGGTGCCGCC
GCGCATCGCCGCCGCGCTCGACGCGTTGCGCGCAGGCCGCGCCGTCGTGCTGCAGGACGACCACGACCGCGAGAACGAGG
CCGATCTGATCGTCGCGGCCGAGCGCATCACGCCCGAAACGATGGCGCTGCTGATCCGCGAATGCAGCGGAATCGTCTGC
CTTTGCCTGACCGACGACAAGGTGCGCGCGCTCGAGCTGCCGCCGATGGTGCAGACCAACGAGAGCCGCAACGGCACGGC
ATTTACCGTATCGATCGAGGCGCGCGAAGGCGTGCATACGGGCGTGTCGGCCGCCGATCGCGTGACGACGATCCGCGCCG
CGATCGCCGACGACGCCAAGCCGCACGACATCGTGCGGCCCGGCCACGTCTTTCCGTTGCGCGCGCAACCGGGTGGCGTG
CTCGCGCGCCGCGGCCATACCGAAGGGACCGTCGACCTCGCGATCCTCGCGGGGCTGAAGCCGGCCGGCGTGCTCTGCGA
ACTGATGAATCCGGACGGCACGATGACGCGCGGCGATGATGTCGAGCGCTTCGCCAGGCAGCATGGATTGCCGATGCTGA
CCATCGCGGAACTCGTCGAATTCCGGTCGGCGCTCGCGGCCGCACGCGAACGGTGCTGCGAACCGGCCTGA

Upstream 100 bases:

>100_bases
GGGCCGCTTCGCGTCGCATGCGAAGCGGGTTGTCGTTCTGTCTGTTTGCAATGCCCTGAAACGTTTTTCGCCCAAATCGT
ATTTGCGAGGAGCGTTTCAC

Downstream 100 bases:

>100_bases
AGCGGGAACGGCGCGCGCGTCGGCGCGCGCCCATCGAAACAGCGTGCCTGCGTCGGCGGCGGCCGGCCAACGCCGGCGCT
GGCCGGCGCGCGTCCGTTCA

Product: 3,4-dihydroxy-2-butanone 4-phosphate synthase

Products: NA

Alternate protein names: DHBP synthase [H]

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MSLMSLSSAPADAFADLPLLDAEPVPPRIAAALDALRAGRAVVLQDDHDRENEADLIVAAERITPETMALLIRECSGIVC
LCLTDDKVRALELPPMVQTNESRNGTAFTVSIEAREGVHTGVSAADRVTTIRAAIADDAKPHDIVRPGHVFPLRAQPGGV
LARRGHTEGTVDLAILAGLKPAGVLCELMNPDGTMTRGDDVERFARQHGLPMLTIAELVEFRSALAAARERCCEPA

Sequences:

>Translated_236_residues
MSLMSLSSAPADAFADLPLLDAEPVPPRIAAALDALRAGRAVVLQDDHDRENEADLIVAAERITPETMALLIRECSGIVC
LCLTDDKVRALELPPMVQTNESRNGTAFTVSIEAREGVHTGVSAADRVTTIRAAIADDAKPHDIVRPGHVFPLRAQPGGV
LARRGHTEGTVDLAILAGLKPAGVLCELMNPDGTMTRGDDVERFARQHGLPMLTIAELVEFRSALAAARERCCEPA
>Mature_235_residues
SLMSLSSAPADAFADLPLLDAEPVPPRIAAALDALRAGRAVVLQDDHDRENEADLIVAAERITPETMALLIRECSGIVCL
CLTDDKVRALELPPMVQTNESRNGTAFTVSIEAREGVHTGVSAADRVTTIRAAIADDAKPHDIVRPGHVFPLRAQPGGVL
ARRGHTEGTVDLAILAGLKPAGVLCELMNPDGTMTRGDDVERFARQHGLPMLTIAELVEFRSALAAARERCCEPA

Specific function: Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate [H]

COG id: COG0108

COG function: function code H; 3,4-dihydroxy-2-butanone 4-phosphate synthase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DHBP synthase family [H]

Homologues:

Organism=Escherichia coli, GI1789420, Length=197, Percent_Identity=62.9441624365482, Blast_Score=248, Evalue=2e-67,
Organism=Saccharomyces cerevisiae, GI6320695, Length=201, Percent_Identity=42.2885572139304, Blast_Score=170, Evalue=2e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR000422 [H]

Pfam domain/function: PF00926 DHBP_synthase [H]

EC number: =4.1.99.12 [H]

Molecular weight: Translated: 25153; Mature: 25022

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLMSLSSAPADAFADLPLLDAEPVPPRIAAALDALRAGRAVVLQDDHDRENEADLIVAA
CCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEE
ERITPETMALLIRECSGIVCLCLTDDKVRALELPPMVQTNESRNGTAFTVSIEAREGVHT
CCCCHHHHHHHHHHCCCEEEEEEECCCEEEEECCCCEECCCCCCCEEEEEEEECCCCCCC
GVSAADRVTTIRAAIADDAKPHDIVRPGHVFPLRAQPGGVLARRGHTEGTVDLAILAGLK
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEEEECCC
PAGVLCELMNPDGTMTRGDDVERFARQHGLPMLTIAELVEFRSALAAARERCCEPA
CCHHEEEEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SLMSLSSAPADAFADLPLLDAEPVPPRIAAALDALRAGRAVVLQDDHDRENEADLIVAA
CCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEE
ERITPETMALLIRECSGIVCLCLTDDKVRALELPPMVQTNESRNGTAFTVSIEAREGVHT
CCCCHHHHHHHHHHCCCEEEEEEECCCEEEEECCCCEECCCCCCCEEEEEEEECCCCCCC
GVSAADRVTTIRAAIADDAKPHDIVRPGHVFPLRAQPGGVLARRGHTEGTVDLAILAGLK
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEEEECCC
PAGVLCELMNPDGTMTRGDDVERFARQHGLPMLTIAELVEFRSALAAARERCCEPA
CCHHEEEEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA