Click here to switch to the map view.

The map label for this gene is ydcN [H]

Identifier: 161523788

GI number: 161523788

Start: 667108

End: 667791

Strand: Direct

Name: ydcN [H]

Synonym: Bmul_0608

Alternate gene names: 161523788

Gene position: 667108-667791 (Clockwise)

Preceding gene: 161523787

Following gene: 161523789

Centisome position: 19.35

GC content: 71.05

Gene sequence:

>684_bases
ATGTCTTCACCCTTGGCGCTCGTGCGCGATGTGTCTTCCTTCGAGTCCGGCGCGGCGGCCGACGCGCAGACGTCCGCGTC
GTTCGACGCGCTCGAGCGGATCGTCGGCGTGAATCTGGCGCGGTTGCGCGCCGAGCGGCAACTGTCGCTCGACGCGCTCG
CGCGGCTGTCCGGCGTGTCGCGCGCGATGCTCGCGCAGATCGAGTCGGCGCGCAGCGTGCCGTCGATCAAGGTGCTGTGC
AAAGTGGCGGCCGCGCTGAAGGTGTCGGTCGCCGCGTTCCTGCGCCGTCACGCCGTGAACGGCTTCGAGCATCTGCCGGC
CGAGCGCGCGTCGCGCGTGGTCAGCTCGAACGGCCGCTTTTCGGCGCGTGCGCTCTATCCGGAAGGCGAGCCCGTTGCGG
CCGAATTCCACGAGCTGCGGATCGCGCCGTTGCATACCGAGCCCGGCGTGCGTCGCGCGCCCGGCACGACCGTGAACCTC
GTCGTCAGCGAGGGGACGCTCGAAGTCGTCGTGCACGACCGGCGCCAGCTGCTCGCGACCGGCGACGCGATCGTGTTCGA
CGCCGATCAGCCGTACAGCCTGCGCAATCCCGGCGACAGCGATGCGCGTGCCTTCCGCGTGACGGTGAGCCCCGAGGTGC
CGCCGCGCTGGCTTGTGCCGGACACCGCGCACGCTGCCGTTTGA

Upstream 100 bases:

>100_bases
CGAAGCGCGGTGATAGCGTGTCGATACGCGTCCTGACGGGCGCCATGTCGATTCCGGCTTACCCATTCGCAGGGCCGCGC
CGCGGCCCGGAGGCAACGTT

Downstream 100 bases:

>100_bases
ATGTCGTTGCGCGGAACAAGGCTCGATCGATCGGGCGACGCGGTTAGACGTCGTCGTCGGTAGGGTTTTGTCCGCGATTC
GCTGCGCGGTGCGCGCGGCT

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 226

Protein sequence:

>227_residues
MSSPLALVRDVSSFESGAAADAQTSASFDALERIVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLC
KVAAALKVSVAAFLRRHAVNGFEHLPAERASRVVSSNGRFSARALYPEGEPVAAEFHELRIAPLHTEPGVRRAPGTTVNL
VVSEGTLEVVVHDRRQLLATGDAIVFDADQPYSLRNPGDSDARAFRVTVSPEVPPRWLVPDTAHAAV

Sequences:

>Translated_227_residues
MSSPLALVRDVSSFESGAAADAQTSASFDALERIVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLC
KVAAALKVSVAAFLRRHAVNGFEHLPAERASRVVSSNGRFSARALYPEGEPVAAEFHELRIAPLHTEPGVRRAPGTTVNL
VVSEGTLEVVVHDRRQLLATGDAIVFDADQPYSLRNPGDSDARAFRVTVSPEVPPRWLVPDTAHAAV
>Mature_226_residues
SSPLALVRDVSSFESGAAADAQTSASFDALERIVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLCK
VAAALKVSVAAFLRRHAVNGFEHLPAERASRVVSSNGRFSARALYPEGEPVAAEFHELRIAPLHTEPGVRRAPGTTVNLV
VSEGTLEVVVHDRRQLLATGDAIVFDADQPYSLRNPGDSDARAFRVTVSPEVPPRWLVPDTAHAAV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=173, Percent_Identity=28.3236994219653, Blast_Score=70, Evalue=8e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 24274; Mature: 24143

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSPLALVRDVSSFESGAAADAQTSASFDALERIVGVNLARLRAERQLSLDALARLSGVS
CCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
RAMLAQIESARSVPSIKVLCKVAAALKVSVAAFLRRHAVNGFEHLPAERASRVVSSNGRF
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHCCCCE
SARALYPEGEPVAAEFHELRIAPLHTEPGVRRAPGTTVNLVVSEGTLEVVVHDRRQLLAT
EEEEECCCCCCHHHHHHHEEEEEECCCCCCCCCCCCEEEEEEECCEEEEEEECHHHHHCC
GDAIVFDADQPYSLRNPGDSDARAFRVTVSPEVPPRWLVPDTAHAAV
CCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHCC
>Mature Secondary Structure 
SSPLALVRDVSSFESGAAADAQTSASFDALERIVGVNLARLRAERQLSLDALARLSGVS
CCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
RAMLAQIESARSVPSIKVLCKVAAALKVSVAAFLRRHAVNGFEHLPAERASRVVSSNGRF
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHCCCCE
SARALYPEGEPVAAEFHELRIAPLHTEPGVRRAPGTTVNLVVSEGTLEVVVHDRRQLLAT
EEEEECCCCCCHHHHHHHEEEEEECCCCCCCCCCCCEEEEEEECCEEEEEEECHHHHHCC
GDAIVFDADQPYSLRNPGDSDARAFRVTVSPEVPPRWLVPDTAHAAV
CCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]