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The map label for this gene is czcR [H]

Identifier: 161523393

GI number: 161523393

Start: 235979

End: 236908

Strand: Direct

Name: czcR [H]

Synonym: Bmul_0213

Alternate gene names: 161523393

Gene position: 235979-236908 (Clockwise)

Preceding gene: 161523391

Following gene: 161523400

Centisome position: 6.84

GC content: 72.9

Gene sequence:

>930_bases
TTGAATACACGCGATCTCCAGGCGTTCGTCGCGGTGGTGGACAGCGGCTCGATGGTGGCCGCGGCGACGCGGCTTCATCT
GACGCAGCCGGGGCTGACGCGGCGCGTGCAGAACCTCGAAACATTGCTCGGCGTGCCGCTGCTCGACCGACAGAGCAAGC
CGCTGAAGCCGACCGCGGCCGGGCGCGACGTGTACGCGCTCGCGCGCAACGTGCTGAGTGCGGTCGATGCGCTGTTGGCG
GCCGGCACGCCGGACAGCGAGCCGACCGGCGAACTGCGGATCGGCGTGCCGCCGTTCCTGTCCGAACTGGCGCTCGAGCA
GCCGATCGACCGGCTGCGCGAAGCGTTCCCGCGCCTCACGCTGCGCGTGACGGCCGGCTGGTCGCCGGCGCTGCTGCAGG
GCGTCGAGCGCGGCACGCTCGACATGGCGACCGTGATGGTGCCGGTCGGCACGACGCTGCCCGACACGCTGAGCGCGACG
CGGCTCGGCACGCAGCCGACCGTGCTCGTCGCCGCACGCGACTTTCCGCTGCCGGACGGGCCGCTGACGCTCGACGCGCT
GTCGCGTTTTCCGTGGGTGCTGAGCCAGGACGGCTGCGGGATGCGTTCGGCGCTGAGCCGTGCGCTCGGCGCGGCCGGGC
TGCCGTTCGACGTCGCGGTCGAGGCGTTCGGCTCCGAGCTGCAGTTGTCGCTGGTGGCGCGCGGCGCGGGGATCGGCATC
GCGCCGCCGAACGCGCTCGCGCGCAGCGCGCATCGCGACGCGCTGAAGATCGTGCCGACCGAGGGGCTCGATACGCGGAT
CGGCGTCTGGATGGTGCACGGGGCGTTGCCGGGCCGGCTGATGCGGCCCGCCGCGCTCTTGCGCGAGGCGCTCGGCGCCG
TGCTGGCGCGGGAAATTGAAACGGGGTCAGATGTAAGCGCGACGGCCTAG

Upstream 100 bases:

>100_bases
CATGGAAGGGCCACCGGAATAGTCGAAGGAAACCCCATCCTAGGCGGCGTCACGTTATGCGACAATTGAAATATCTCTAA
CATCATTATGCGAGTTTGCT

Downstream 100 bases:

>100_bases
CGCCCGCCGGACGGCATTAGAGGCGCCATTCGAGGGAAAATCCTTATTTTCTCTACGGAAATGTTGCGCTGCGCAAATCG
ATTCGCTATAGTTACACCTG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MNTRDLQAFVAVVDSGSMVAAATRLHLTQPGLTRRVQNLETLLGVPLLDRQSKPLKPTAAGRDVYALARNVLSAVDALLA
AGTPDSEPTGELRIGVPPFLSELALEQPIDRLREAFPRLTLRVTAGWSPALLQGVERGTLDMATVMVPVGTTLPDTLSAT
RLGTQPTVLVAARDFPLPDGPLTLDALSRFPWVLSQDGCGMRSALSRALGAAGLPFDVAVEAFGSELQLSLVARGAGIGI
APPNALARSAHRDALKIVPTEGLDTRIGVWMVHGALPGRLMRPAALLREALGAVLAREIETGSDVSATA

Sequences:

>Translated_309_residues
MNTRDLQAFVAVVDSGSMVAAATRLHLTQPGLTRRVQNLETLLGVPLLDRQSKPLKPTAAGRDVYALARNVLSAVDALLA
AGTPDSEPTGELRIGVPPFLSELALEQPIDRLREAFPRLTLRVTAGWSPALLQGVERGTLDMATVMVPVGTTLPDTLSAT
RLGTQPTVLVAARDFPLPDGPLTLDALSRFPWVLSQDGCGMRSALSRALGAAGLPFDVAVEAFGSELQLSLVARGAGIGI
APPNALARSAHRDALKIVPTEGLDTRIGVWMVHGALPGRLMRPAALLREALGAVLAREIETGSDVSATA
>Mature_309_residues
MNTRDLQAFVAVVDSGSMVAAATRLHLTQPGLTRRVQNLETLLGVPLLDRQSKPLKPTAAGRDVYALARNVLSAVDALLA
AGTPDSEPTGELRIGVPPFLSELALEQPIDRLREAFPRLTLRVTAGWSPALLQGVERGTLDMATVMVPVGTTLPDTLSAT
RLGTQPTVLVAARDFPLPDGPLTLDALSRFPWVLSQDGCGMRSALSRALGAAGLPFDVAVEAFGSELQLSLVARGAGIGI
APPNALARSAHRDALKIVPTEGLDTRIGVWMVHGALPGRLMRPAALLREALGAVLAREIETGSDVSATA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=253, Percent_Identity=29.6442687747036, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1787879, Length=276, Percent_Identity=28.6231884057971, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790399, Length=275, Percent_Identity=27.2727272727273, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787530, Length=244, Percent_Identity=28.2786885245902, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1788297, Length=253, Percent_Identity=28.4584980237154, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI157672245, Length=260, Percent_Identity=28.8461538461538, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1789506, Length=220, Percent_Identity=26.3636363636364, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI145693105, Length=246, Percent_Identity=26.0162601626016, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787806, Length=161, Percent_Identity=27.9503105590062, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1789639, Length=201, Percent_Identity=27.363184079602, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI87082132, Length=292, Percent_Identity=25.3424657534247, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789204, Length=170, Percent_Identity=27.0588235294118, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788296, Length=238, Percent_Identity=24.3697478991597, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32428; Mature: 32428

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTRDLQAFVAVVDSGSMVAAATRLHLTQPGLTRRVQNLETLLGVPLLDRQSKPLKPTAA
CCCHHHHHHHHHHCCCCEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
GRDVYALARNVLSAVDALLAAGTPDSEPTGELRIGVPPFLSELALEQPIDRLREAFPRLT
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCEE
LRVTAGWSPALLQGVERGTLDMATVMVPVGTTLPDTLSATRLGTQPTVLVAARDFPLPDG
EEEECCCCHHHHHHHCCCCHHHEEEEEECCCCCCCHHHHHHCCCCCEEEEEEECCCCCCC
PLTLDALSRFPWVLSQDGCGMRSALSRALGAAGLPFDVAVEAFGSELQLSLVARGAGIGI
CEEHHHHHHCCEEECCCCCCHHHHHHHHHCCCCCCHHHHHHHCCCCEEEEEEECCCCCCC
APPNALARSAHRDALKIVPTEGLDTRIGVWMVHGALPGRLMRPAALLREALGAVLAREIE
CCCHHHHHHHCCCCEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHC
TGSDVSATA
CCCCCCCCC
>Mature Secondary Structure
MNTRDLQAFVAVVDSGSMVAAATRLHLTQPGLTRRVQNLETLLGVPLLDRQSKPLKPTAA
CCCHHHHHHHHHHCCCCEEEHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
GRDVYALARNVLSAVDALLAAGTPDSEPTGELRIGVPPFLSELALEQPIDRLREAFPRLT
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCEE
LRVTAGWSPALLQGVERGTLDMATVMVPVGTTLPDTLSATRLGTQPTVLVAARDFPLPDG
EEEECCCCHHHHHHHCCCCHHHEEEEEECCCCCCCHHHHHHCCCCCEEEEEEECCCCCCC
PLTLDALSRFPWVLSQDGCGMRSALSRALGAAGLPFDVAVEAFGSELQLSLVARGAGIGI
CEEHHHHHHCCEEECCCCCCHHHHHHHHHCCCCCCHHHHHHHCCCCEEEEEEECCCCCCC
APPNALARSAHRDALKIVPTEGLDTRIGVWMVHGALPGRLMRPAALLREALGAVLAREIE
CCCHHHHHHHCCCCEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHC
TGSDVSATA
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA