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The map label for this gene is tctD [H]

Identifier: 161523212

GI number: 161523212

Start: 38493

End: 39170

Strand: Reverse

Name: tctD [H]

Synonym: Bmul_0032

Alternate gene names: 161523212

Gene position: 39170-38493 (Counterclockwise)

Preceding gene: 161523213

Following gene: 161523211

Centisome position: 1.14

GC content: 67.4

Gene sequence:

>678_bases
ATGAAACTGCTGCTGGTCGAAGACAACGCCGAACTCGCGCACTGGATCGTGAACCTCTTGCGCGGCGAGGATTTCGCGGT
CGACTGCGTCGGCGACGGCGAACGCGCGGACACCGTGCTGAAGACCGAGCGCTACGACGCGGTGCTGCTCGACATGCGGC
TGCCGGGCATCAGCGGCAAGGAGGTGCTCGCGCGGCTGCGGCGCCGCAACGACAACGTGCCGGTGCTGATGCTGACCGCG
CACGGGTCCGTCGACGACAAGGTCGACTGCTTCGGCGCCGGCGCCGACGACTACGTCGTCAAGCCGTTCGAATCGCGCGA
GCTGGTCGCGCGGATTCGCGCGCTGATCCGGCGGCAGGCCGGTGTCGGCTCGACGCAGCTCGTGTGCGGCGACCTCGTCT
ATGCGTTCGGCACGCGCGAATTCCGCTGCGGCGACGCGCCGCTCGTATTGCGCCGACGCGAGCATGCGATCCTCGAAACG
CTGATGCTGCAGCAGAACAAGACGGTGTCGAAGGCGCGGCTGATGGACAGCGTGTTCGCGCTCGACGACGAACCGAGCGC
GGACGCGATCGACATCTACATCCATCGCTTGCGCAAGCATCTGGCCGCGAGCAGCGCGGAGATCATCACGCTGCGCGGGC
TCGGTTACATCCTTCGCGCGAAGGCCGGCACGGCCTGA

Upstream 100 bases:

>100_bases
CAGGCGCACGGCGGCAGCGCGACGCTCGCGCCGGGACCCGGCAACCGCGGCGTCGTCGTGACGGTGCGGCTGCCTGCGTA
CGATTGAAGAGAACGCTGCG

Downstream 100 bases:

>100_bases
GCGTTCCTCACGCGGGGGCCCGCGCCTGCAGTGCGCCGCATGCCCGCTGCGCCTCCGCTTCGCATCGATTCGCATCCCCA
ATCATCGACTAAACCGTGCG

Product: two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MKLLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGKEVLARLRRRNDNVPVLMLTA
HGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQAGVGSTQLVCGDLVYAFGTREFRCGDAPLVLRRREHAILET
LMLQQNKTVSKARLMDSVFALDDEPSADAIDIYIHRLRKHLAASSAEIITLRGLGYILRAKAGTA

Sequences:

>Translated_225_residues
MKLLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGKEVLARLRRRNDNVPVLMLTA
HGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQAGVGSTQLVCGDLVYAFGTREFRCGDAPLVLRRREHAILET
LMLQQNKTVSKARLMDSVFALDDEPSADAIDIYIHRLRKHLAASSAEIITLRGLGYILRAKAGTA
>Mature_225_residues
MKLLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGKEVLARLRRRNDNVPVLMLTA
HGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQAGVGSTQLVCGDLVYAFGTREFRCGDAPLVLRRREHAILET
LMLQQNKTVSKARLMDSVFALDDEPSADAIDIYIHRLRKHLAASSAEIITLRGLGYILRAKAGTA

Specific function: Transcriptional activator of the tctI tricarboxylate transport system operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1790552, Length=221, Percent_Identity=38.4615384615385, Blast_Score=156, Evalue=1e-39,
Organism=Escherichia coli, GI1789402, Length=221, Percent_Identity=34.3891402714932, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1787375, Length=220, Percent_Identity=35.4545454545455, Blast_Score=128, Evalue=3e-31,
Organism=Escherichia coli, GI1789809, Length=227, Percent_Identity=34.3612334801762, Blast_Score=124, Evalue=4e-30,
Organism=Escherichia coli, GI1786784, Length=226, Percent_Identity=32.3008849557522, Blast_Score=124, Evalue=5e-30,
Organism=Escherichia coli, GI87082012, Length=221, Percent_Identity=32.1266968325792, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI1790860, Length=224, Percent_Identity=36.1607142857143, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1786599, Length=220, Percent_Identity=31.3636363636364, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI2367329, Length=228, Percent_Identity=36.4035087719298, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI1788394, Length=226, Percent_Identity=28.7610619469027, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1790863, Length=226, Percent_Identity=29.2035398230088, Blast_Score=84, Evalue=6e-18,
Organism=Escherichia coli, GI1786911, Length=220, Percent_Identity=28.1818181818182, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787229, Length=226, Percent_Identity=28.7610619469027, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1788550, Length=107, Percent_Identity=29.9065420560748, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1790299, Length=108, Percent_Identity=29.6296296296296, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790437, Length=112, Percent_Identity=30.3571428571429, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 24958; Mature: 24958

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGK
CEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCEEEEEEECCCCCHH
EVLARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA
HHHHHHHHCCCCCCEEEEEECCCCCCCCEEEECCCCCCEECCCCHHHHHHHHHHHHHHHC
GVGSTQLVCGDLVYAFGTREFRCGDAPLVLRRREHAILETLMLQQNKTVSKARLMDSVFA
CCCCCHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
LDDEPSADAIDIYIHRLRKHLAASSAEIITLRGLGYILRAKAGTA
CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEECCCCC
>Mature Secondary Structure
MKLLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGK
CEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCEEEEEEECCCCCHH
EVLARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA
HHHHHHHHCCCCCCEEEEEECCCCCCCCEEEECCCCCCEECCCCHHHHHHHHHHHHHHHC
GVGSTQLVCGDLVYAFGTREFRCGDAPLVLRRREHAILETLMLQQNKTVSKARLMDSVFA
CCCCCHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
LDDEPSADAIDIYIHRLRKHLAASSAEIITLRGLGYILRAKAGTA
CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2666399; 11083839; 11677609 [H]