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The map label for this gene is rpoE [H]

Identifier: 161523187

GI number: 161523187

Start: 9242

End: 9760

Strand: Direct

Name: rpoE [H]

Synonym: Bmul_0007

Alternate gene names: 161523187

Gene position: 9242-9760 (Clockwise)

Preceding gene: 161523183

Following gene: 161523188

Centisome position: 0.27

GC content: 68.4

Gene sequence:

>519_bases
ATGCCCTCAAACGCCCTCGACGACGACGCGTTACGCGAACTCATCCCTCGGCTGCGCCGCTTCGCGCTGTGGCTCGCGCG
CGATGTGCACGCGGCCGACGATCTCGTGCAGTCGACGCTCGAGCGCGCGCTGTCGCGCTGGACGAGCCGTCGCGACGACG
CGTCGCTGCGCAGCTGGCTGTTCACGATCCTTTACCGGCAGTTTCTCGACGGCAAACGCAGCGCGAAACGCTACGCGTGG
CTGCTCGGTCGCATCCGCGACGACGAAGAGCCGCATTGGCCGTCCGCCGAGCGCGAAGTCGCCGCGCGGGCGACGCTCGA
GGCGTTCGGCCGGCTGTCCGACGAGCAGCGCAGCCTGCTGCTGCTCGTCGCGGTCGAGGGCTTTACGTATCAGGAAGTCG
CCGATTTGCTCGACGTGCCGATCGGCACGGTGATGTCGCGGCTGTCGCGCGCGCGTCAGGCGCTGCGTCTGCTCAGCGAC
GGCGAACTGCCGGCCCCTTCACTGCGGTTGATGAAATGA

Upstream 100 bases:

>100_bases
CGCCTTTATTCCATGAAGAAATTTTTCGTATGCTGATGGAATAACGGACGTCGACCGGCGTCATACGCGGCATCTCCACG
TTTCCGGCAACGGTCCGGCC

Downstream 100 bases:

>100_bases
ATCCGATCCGTCCCGATGAACACGATCTCCAGGCCTATGTCGACGGCCAGCTCGACGACGACGCGCGCGCCGCGGTCGAG
CGCTATCTCGCGCTGCACCC

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 172; Mature: 171

Protein sequence:

>172_residues
MPSNALDDDALRELIPRLRRFALWLARDVHAADDLVQSTLERALSRWTSRRDDASLRSWLFTILYRQFLDGKRSAKRYAW
LLGRIRDDEEPHWPSAEREVAARATLEAFGRLSDEQRSLLLLVAVEGFTYQEVADLLDVPIGTVMSRLSRARQALRLLSD
GELPAPSLRLMK

Sequences:

>Translated_172_residues
MPSNALDDDALRELIPRLRRFALWLARDVHAADDLVQSTLERALSRWTSRRDDASLRSWLFTILYRQFLDGKRSAKRYAW
LLGRIRDDEEPHWPSAEREVAARATLEAFGRLSDEQRSLLLLVAVEGFTYQEVADLLDVPIGTVMSRLSRARQALRLLSD
GELPAPSLRLMK
>Mature_171_residues
PSNALDDDALRELIPRLRRFALWLARDVHAADDLVQSTLERALSRWTSRRDDASLRSWLFTILYRQFLDGKRSAKRYAWL
LGRIRDDEEPHWPSAEREVAARATLEAFGRLSDEQRSLLLLVAVEGFTYQEVADLLDVPIGTVMSRLSRARQALRLLSDG
ELPAPSLRLMK

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19787; Mature: 19656

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSNALDDDALRELIPRLRRFALWLARDVHAADDLVQSTLERALSRWTSRRDDASLRSWL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
FTILYRQFLDGKRSAKRYAWLLGRIRDDEEPHWPSAEREVAARATLEAFGRLSDEQRSLL
HHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHEE
LLVAVEGFTYQEVADLLDVPIGTVMSRLSRARQALRLLSDGELPAPSLRLMK
EEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCC
>Mature Secondary Structure 
PSNALDDDALRELIPRLRRFALWLARDVHAADDLVQSTLERALSRWTSRRDDASLRSWL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
FTILYRQFLDGKRSAKRYAWLLGRIRDDEEPHWPSAEREVAARATLEAFGRLSDEQRSLL
HHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHEE
LLVAVEGFTYQEVADLLDVPIGTVMSRLSRARQALRLLSDGELPAPSLRLMK
EEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]