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The map label for this gene is ydfC [H]

Identifier: 161508375

GI number: 161508375

Start: 122881

End: 123762

Strand: Reverse

Name: ydfC [H]

Synonym: USA300HOU_0118

Alternate gene names: 161508375

Gene position: 123762-122881 (Counterclockwise)

Preceding gene: 161508379

Following gene: 161508374

Centisome position: 4.31

GC content: 30.61

Gene sequence:

>882_bases
ATGATATTAATGAATAAACTTCAAGACACTACTTTTCTATCATATTTATTTACTATCATATTGTGGGGATCTGCATTTCC
AATGATAAAGATTGCGTTAAATGATTTTAGTGCAGAATCATTGTCGGCATTTCGTTTAATTTTAGCAACAATAATTCTCT
TGCCGTTCGTAATTATAAAGAAATTGCCTACCCCTGAACTAAGAGATATCCCTGTTATTTTTATTTTAGGATTTTGTGGA
TTTGTGATATATCACACAGCTTTAAATTTTGGTGAAGCTTTGATTAGTGCAGGTATATCTGGAATTCTAGTCTCTACAAC
GCCTATTTTTTCTAGTGCTTTAGCTTATATATTTTTAAAAGAGCATTTTTCAAAATGGAATTGGTTAAGTTCACTCGTCG
CATTTATAGGAATATCCATTATTTCAATAAGTAAAGATGATTACACAACTATTAATGTATTAGGTGTTTTTATTATTTTA
CTTGCATCTTTTAGTGAAAGTTTGTATTTTACTTTCCAGAAAAAATACATAGAAAAATACGGCTTCATCGCTTTCACACT
ATATACAATAATGGCAAGCTCACCATTTATGCTTATTTTTATTCCTGAAATCATCAACGATATACACGGCGCCACTTTTA
CATCAATAGTATCGGTACTTTATTTAGCTATATTCCCTACTATAATTCCATACGTTTTGCTTGCTTATATTGTGAAGTCA
GTTGGTGTCTCTGATGCAACAATGTCTCTTTATTTAACACCTATCGTTTCTTTATTATTATCTTATCTGTTATTAGACGA
GCTACCAACAACCCTTGCTATTATAGGCGGAATTATCACTCTACTAGGCGTTAGTTTAAGTAACTTCTTTCAAAATACAT
AA

Upstream 100 bases:

>100_bases
CTCCCTCCCTTTTAAAATTGGATAGGTAAATCCATTCAAAATTGGTTGTACTCATTTTAAATCATATTTTTTAATATAGA
AACACATAATTAAAGGAGTG

Downstream 100 bases:

>100_bases
TTATTCCAAGTCCCGCACCTCAGAATCCAAAAACATTCGAGTGATAAAATTTTAAAAATCAAAAATATAAAAATGATCTA
ATTTCGTCAAATTTACCAAT

Product: DMT family permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MILMNKLQDTTFLSYLFTIILWGSAFPMIKIALNDFSAESLSAFRLILATIILLPFVIIKKLPTPELRDIPVIFILGFCG
FVIYHTALNFGEALISAGISGILVSTTPIFSSALAYIFLKEHFSKWNWLSSLVAFIGISIISISKDDYTTINVLGVFIIL
LASFSESLYFTFQKKYIEKYGFIAFTLYTIMASSPFMLIFIPEIINDIHGATFTSIVSVLYLAIFPTIIPYVLLAYIVKS
VGVSDATMSLYLTPIVSLLLSYLLLDELPTTLAIIGGIITLLGVSLSNFFQNT

Sequences:

>Translated_293_residues
MILMNKLQDTTFLSYLFTIILWGSAFPMIKIALNDFSAESLSAFRLILATIILLPFVIIKKLPTPELRDIPVIFILGFCG
FVIYHTALNFGEALISAGISGILVSTTPIFSSALAYIFLKEHFSKWNWLSSLVAFIGISIISISKDDYTTINVLGVFIIL
LASFSESLYFTFQKKYIEKYGFIAFTLYTIMASSPFMLIFIPEIINDIHGATFTSIVSVLYLAIFPTIIPYVLLAYIVKS
VGVSDATMSLYLTPIVSLLLSYLLLDELPTTLAIIGGIITLLGVSLSNFFQNT
>Mature_293_residues
MILMNKLQDTTFLSYLFTIILWGSAFPMIKIALNDFSAESLSAFRLILATIILLPFVIIKKLPTPELRDIPVIFILGFCG
FVIYHTALNFGEALISAGISGILVSTTPIFSSALAYIFLKEHFSKWNWLSSLVAFIGISIISISKDDYTTINVLGVFIIL
LASFSESLYFTFQKKYIEKYGFIAFTLYTIMASSPFMLIFIPEIINDIHGATFTSIVSVLYLAIFPTIIPYVLLAYIVKS
VGVSDATMSLYLTPIVSLLLSYLLLDELPTTLAIIGGIITLLGVSLSNFFQNT

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32509; Mature: 32509

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILMNKLQDTTFLSYLFTIILWGSAFPMIKIALNDFSAESLSAFRLILATIILLPFVIIK
CCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
KLPTPELRDIPVIFILGFCGFVIYHTALNFGEALISAGISGILVSTTPIFSSALAYIFLK
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHH
EHFSKWNWLSSLVAFIGISIISISKDDYTTINVLGVFIILLASFSESLYFTFQKKYIEKY
HHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFIAFTLYTIMASSPFMLIFIPEIINDIHGATFTSIVSVLYLAIFPTIIPYVLLAYIVKS
HHHHHHHHHHHHCCCEEEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGVSDATMSLYLTPIVSLLLSYLLLDELPTTLAIIGGIITLLGVSLSNFFQNT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MILMNKLQDTTFLSYLFTIILWGSAFPMIKIALNDFSAESLSAFRLILATIILLPFVIIK
CCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
KLPTPELRDIPVIFILGFCGFVIYHTALNFGEALISAGISGILVSTTPIFSSALAYIFLK
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHH
EHFSKWNWLSSLVAFIGISIISISKDDYTTINVLGVFIILLASFSESLYFTFQKKYIEKY
HHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFIAFTLYTIMASSPFMLIFIPEIINDIHGATFTSIVSVLYLAIFPTIIPYVLLAYIVKS
HHHHHHHHHHHHCCCEEEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGVSDATMSLYLTPIVSLLLSYLLLDELPTTLAIIGGIITLLGVSLSNFFQNT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]