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The map label for this gene is hfq [H]

Identifier: 160902827

GI number: 160902827

Start: 1488908

End: 1489150

Strand: Direct

Name: hfq [H]

Synonym: Pmob_1381

Alternate gene names: 160902827

Gene position: 1488908-1489150 (Clockwise)

Preceding gene: 160902826

Following gene: 160902828

Centisome position: 68.63

GC content: 32.92

Gene sequence:

>243_bases
ATGGCAGAAAAGTTCAATTTACAAGACCGATTTTTGAATATTTTGAGGATTAACAAGATAGAAGTAAAAATCTATTTAGA
AGGGGGATTTCAAACAAGTGGAGTGGTGAGATCTTTTGATGATTATACTGTTTTGTTGGGAAAAAACGGTGAACAATCAC
TGGTTTATAAACATGCCGTAAAAATGATGGTACCTTCGAAATATATTAAACTTTTCCAAGAACCACCGTCTAAAGATGAG
TAG

Upstream 100 bases:

>100_bases
AAGGTGCAAAGTGGATCAATTTGAGTAAAACAAGTCAAGAAGAGGTAGTAGATCAAATATTAAGTGAATTTATTTAATTT
CTTGTGCGAGGGGTGATAAC

Downstream 100 bases:

>100_bases
AAAGAAAAACTACCCCCATTTAAGAAGGGGTAGTTTTCTAGTATTTTTACAAAATAATGTAATGAAAATGTTGGAGGGAA
TTAATTTGAAAAAAACTTTT

Product: RNA chaperone Hfq

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 80; Mature: 79

Protein sequence:

>80_residues
MAEKFNLQDRFLNILRINKIEVKIYLEGGFQTSGVVRSFDDYTVLLGKNGEQSLVYKHAVKMMVPSKYIKLFQEPPSKDE

Sequences:

>Translated_80_residues
MAEKFNLQDRFLNILRINKIEVKIYLEGGFQTSGVVRSFDDYTVLLGKNGEQSLVYKHAVKMMVPSKYIKLFQEPPSKDE
>Mature_79_residues
AEKFNLQDRFLNILRINKIEVKIYLEGGFQTSGVVRSFDDYTVLLGKNGEQSLVYKHAVKMMVPSKYIKLFQEPPSKDE

Specific function: RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs [H]

COG id: COG1923

COG function: function code R; Uncharacterized host factor I protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hfq family [H]

Homologues:

Organism=Escherichia coli, GI1790614, Length=70, Percent_Identity=44.2857142857143, Blast_Score=62, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005001
- InterPro:   IPR010920
- InterPro:   IPR001163 [H]

Pfam domain/function: PF01423 LSM [H]

EC number: NA

Molecular weight: Translated: 9285; Mature: 9154

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEKFNLQDRFLNILRINKIEVKIYLEGGFQTSGVVRSFDDYTVLLGKNGEQSLVYKHAV
CCCCCCCHHHHHHHEEEEEEEEEEEEECCCCCCCEEECCCCEEEEEECCCCCHHHHHHHH
KMMVPSKYIKLFQEPPSKDE
HHHCCHHHHHHHCCCCCCCC
>Mature Secondary Structure 
AEKFNLQDRFLNILRINKIEVKIYLEGGFQTSGVVRSFDDYTVLLGKNGEQSLVYKHAV
CCCCCCHHHHHHHEEEEEEEEEEEEECCCCCCCEEECCCCEEEEEECCCCCHHHHHHHH
KMMVPSKYIKLFQEPPSKDE
HHHCCHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]