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The map label for this gene is ycjO [C]

Identifier: 160901519

GI number: 160901519

Start: 25072

End: 25974

Strand: Direct

Name: ycjO [C]

Synonym: Pmob_0028

Alternate gene names: 160901519

Gene position: 25072-25974 (Clockwise)

Preceding gene: 160901518

Following gene: 160901520

Centisome position: 1.16

GC content: 36.43

Gene sequence:

>903_bases
ATGAAAGTAAAAGGTACGTATAAGAGATCCGATATCTGGCTTGCCTTTTGGCTCATTATTCCAACTTTAATTGCTATCGG
TATTACCGCCTTCTATCCTCTAGGACAAACTCTTTATGATAGTTTCTTCAAATGGTCTCTCAGACCAGGATTTGAAAGAG
AGTTTGTAGGATTTCAAAATTATGTCAATTTGTTTCAAGATCCCAGATTTTTGAGTTCTTTGTGGAATACAATTTATTTC
ACTTTTTTTTCTGTACTTATAGAATTCCTTTTGGGATTAGGAACAGCTTTAATATTGAATGCGGATTTTAAATTGAGAGG
TTTGGTAAGAGCAGCAGTTTTAATACCATGGGCAATACCTACAGCCGTCTCTTCCCAAATGTGGAAATGGATGTATAATG
ATCAATATGGTGTAATAAGTTTAATGCTATATAATCTAGGAATACTTGAGGAAGGTACCCCCATTCTAGGAACTCCAGGT
ATGGCTATGGCTGCGATTATAGGCGTTGATGTATGGAAAACTACTCCTTTTGTTGCTCTTTTACTCCTTGCAGGACTTCA
AATCATACCTAATGAGTTATACGAAGCAGCTAGAATTGATGGCGCCACTATATGGAAGCAATTCACTTCTATCACTTTAC
CTGTGTTAAGGCCTACGATTGGTGTAACGTTGATCTTCAGAACTTTGGACGCTTTGAGGGTTTTCGATATTGTTTACATC
ATGACACAAGGAGCAGTGGGAACGGAAACTCTCGCAGTTTACAATAGGTCACTTTTAATGGATAATATCTTCTCTCCAAG
AGGTTTGTTTGGTTATGGCTCTGCATTATCGGTTGTAATATTTTTGATAATTGGTATATTTACAATAATCTATATGCGCT
CGTTGAACATTAAATTAGATTGA

Upstream 100 bases:

>100_bases
GAAGAATTTGATATAATTTTCATAGGTGGGCGGTAAACGGAGTTCCTCCGTCTACCGCCTTTCTGTATAATATAGTAGAC
TATAATTAGGGGGTGCGTTA

Downstream 100 bases:

>100_bases
GGAGGGCAAAAATATGAGATGGGGAATGCGAGCAAAAAGAAATACTCAACGTACAATTTTATATATTCTGGTTATACTGA
TGGTTATCTTTTACATTTTC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MKVKGTYKRSDIWLAFWLIIPTLIAIGITAFYPLGQTLYDSFFKWSLRPGFEREFVGFQNYVNLFQDPRFLSSLWNTIYF
TFFSVLIEFLLGLGTALILNADFKLRGLVRAAVLIPWAIPTAVSSQMWKWMYNDQYGVISLMLYNLGILEEGTPILGTPG
MAMAAIIGVDVWKTTPFVALLLLAGLQIIPNELYEAARIDGATIWKQFTSITLPVLRPTIGVTLIFRTLDALRVFDIVYI
MTQGAVGTETLAVYNRSLLMDNIFSPRGLFGYGSALSVVIFLIIGIFTIIYMRSLNIKLD

Sequences:

>Translated_300_residues
MKVKGTYKRSDIWLAFWLIIPTLIAIGITAFYPLGQTLYDSFFKWSLRPGFEREFVGFQNYVNLFQDPRFLSSLWNTIYF
TFFSVLIEFLLGLGTALILNADFKLRGLVRAAVLIPWAIPTAVSSQMWKWMYNDQYGVISLMLYNLGILEEGTPILGTPG
MAMAAIIGVDVWKTTPFVALLLLAGLQIIPNELYEAARIDGATIWKQFTSITLPVLRPTIGVTLIFRTLDALRVFDIVYI
MTQGAVGTETLAVYNRSLLMDNIFSPRGLFGYGSALSVVIFLIIGIFTIIYMRSLNIKLD
>Mature_300_residues
MKVKGTYKRSDIWLAFWLIIPTLIAIGITAFYPLGQTLYDSFFKWSLRPGFEREFVGFQNYVNLFQDPRFLSSLWNTIYF
TFFSVLIEFLLGLGTALILNADFKLRGLVRAAVLIPWAIPTAVSSQMWKWMYNDQYGVISLMLYNLGILEEGTPILGTPG
MAMAAIIGVDVWKTTPFVALLLLAGLQIIPNELYEAARIDGATIWKQFTSITLPVLRPTIGVTLIFRTLDALRVFDIVYI
MTQGAVGTETLAVYNRSLLMDNIFSPRGLFGYGSALSVVIFLIIGIFTIIYMRSLNIKLD

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane (Probable) [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=270, Percent_Identity=32.5925925925926, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI1789861, Length=292, Percent_Identity=29.7945205479452, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1790465, Length=269, Percent_Identity=27.5092936802974, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33852; Mature: 33852

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVKGTYKRSDIWLAFWLIIPTLIAIGITAFYPLGQTLYDSFFKWSLRPGFEREFVGFQN
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHH
YVNLFQDPRFLSSLWNTIYFTFFSVLIEFLLGLGTALILNADFKLRGLVRAAVLIPWAIP
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHH
TAVSSQMWKWMYNDQYGVISLMLYNLGILEEGTPILGTPGMAMAAIIGVDVWKTTPFVAL
HHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LLLAGLQIIPNELYEAARIDGATIWKQFTSITLPVLRPTIGVTLIFRTLDALRVFDIVYI
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MTQGAVGTETLAVYNRSLLMDNIFSPRGLFGYGSALSVVIFLIIGIFTIIYMRSLNIKLD
HHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKVKGTYKRSDIWLAFWLIIPTLIAIGITAFYPLGQTLYDSFFKWSLRPGFEREFVGFQN
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHH
YVNLFQDPRFLSSLWNTIYFTFFSVLIEFLLGLGTALILNADFKLRGLVRAAVLIPWAIP
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHH
TAVSSQMWKWMYNDQYGVISLMLYNLGILEEGTPILGTPGMAMAAIIGVDVWKTTPFVAL
HHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LLLAGLQIIPNELYEAARIDGATIWKQFTSITLPVLRPTIGVTLIFRTLDALRVFDIVYI
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MTQGAVGTETLAVYNRSLLMDNIFSPRGLFGYGSALSVVIFLIIGIFTIIYMRSLNIKLD
HHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA