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The map label for this gene is yocS [H]

Identifier: 160877340

GI number: 160877340

Start: 5015579

End: 5016481

Strand: Reverse

Name: yocS [H]

Synonym: Sbal195_4238

Alternate gene names: 160877340

Gene position: 5016481-5015579 (Counterclockwise)

Preceding gene: 160877343

Following gene: 160877338

Centisome position: 93.81

GC content: 46.84

Gene sequence:

>903_bases
ATGTTGGTAAACGTAAACCGCTTCTTCCCGCTGTTGGCACTCATAGGCGCTGTGACCGCTTATTTGATGCCGAGTTGGTT
TACTGAGCTTAAATCCGCCATAGTGCCGCTGTTAGTGATCATCATGCTCTCTATGGGACTCACCTTAGATCTGCAGGATT
TTGCTAATGCATTCAAACAAAAACGCGCCGTGCTGACTGGACTGATACTGCAATTTTCGGTCATGCCGCTCAGCGCATTA
TTAATCAGCCAGTTATTAGGATTAGATAGGGAACTCACCATTGGCATGGTGTTGGTGGGCAGTGTTGCAGGTGGCACTGC
CTCAAACGTGGTCTGTTACTTGGCAAAAGGCGACGTGGCTTTATCGATAACTATGACGGCACTATCGACCTTAGCGGGCG
TAGTATTAACGCCACTGATTATTAAGTTGTTGATTGGCGAAATGATCGATATTCCCTTCGCCGACATGCTACTGAGCTTA
GTGAAAATCGTGCTATTCCCCGTTAGCGCAGGCGTGATCATCAATCATTTCTTTAAATCGCTGGTGGCCAAAGTCGCGCC
TGCATTGCCGTTGATTTCAATCTTGGCAATCGTGATGGCGATTACCATTATCGTGGCGTTAAATGCCAATCAGTTTGATA
AAGTTGGCCCCATTATTTTGCTGGCAGTGTTCTTACATAATGGTTTTGGCCTCGCTTTAGGCTACTTTTGCTGCCGTTTA
TTAGGCTTTAACCATACCGTCTGCAAAACCATTTCCATCGAAGTCGGCCTACAAAACTCTGGCCTAGCTACCGCTTTGTG
CATCAAGTTTTTTAGCCCTATTTCTGCCATCCCCAGCGCGATATTCTCGATATGGCATAACCTATCAGGCGCCATCTTGG
CGGGATATTGGGCGAGGGAATAA

Upstream 100 bases:

>100_bases
CATTCTAGGCTTTATTGCTGGTGGATTAGCGCTTGTCTATCCAATGCTCGACTGTCATCATCCGAGCGATAAAATAACCT
CCTGATCTAAAGGGCTAGCT

Downstream 100 bases:

>100_bases
TAAGATGTTGCTATCGAAAATAGACAATACCTGTGGTCTAGCAAGCGCGGTCACAGGCTTAGATTGCTGTGACTAATCAA
CCGGTAATGGGGTCTCGACG

Product: bile acid:sodium symporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MLVNVNRFFPLLALIGAVTAYLMPSWFTELKSAIVPLLVIIMLSMGLTLDLQDFANAFKQKRAVLTGLILQFSVMPLSAL
LISQLLGLDRELTIGMVLVGSVAGGTASNVVCYLAKGDVALSITMTALSTLAGVVLTPLIIKLLIGEMIDIPFADMLLSL
VKIVLFPVSAGVIINHFFKSLVAKVAPALPLISILAIVMAITIIVALNANQFDKVGPIILLAVFLHNGFGLALGYFCCRL
LGFNHTVCKTISIEVGLQNSGLATALCIKFFSPISAIPSAIFSIWHNLSGAILAGYWARE

Sequences:

>Translated_300_residues
MLVNVNRFFPLLALIGAVTAYLMPSWFTELKSAIVPLLVIIMLSMGLTLDLQDFANAFKQKRAVLTGLILQFSVMPLSAL
LISQLLGLDRELTIGMVLVGSVAGGTASNVVCYLAKGDVALSITMTALSTLAGVVLTPLIIKLLIGEMIDIPFADMLLSL
VKIVLFPVSAGVIINHFFKSLVAKVAPALPLISILAIVMAITIIVALNANQFDKVGPIILLAVFLHNGFGLALGYFCCRL
LGFNHTVCKTISIEVGLQNSGLATALCIKFFSPISAIPSAIFSIWHNLSGAILAGYWARE
>Mature_300_residues
MLVNVNRFFPLLALIGAVTAYLMPSWFTELKSAIVPLLVIIMLSMGLTLDLQDFANAFKQKRAVLTGLILQFSVMPLSAL
LISQLLGLDRELTIGMVLVGSVAGGTASNVVCYLAKGDVALSITMTALSTLAGVVLTPLIIKLLIGEMIDIPFADMLLSL
VKIVLFPVSAGVIINHFFKSLVAKVAPALPLISILAIVMAITIIVALNANQFDKVGPIILLAVFLHNGFGLALGYFCCRL
LGFNHTVCKTISIEVGLQNSGLATALCIKFFSPISAIPSAIFSIWHNLSGAILAGYWARE

Specific function: Unknown

COG id: COG0385

COG function: function code R; Predicted Na+-dependent transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:bile acid symporter family [H]

Homologues:

Organism=Homo sapiens, GI4506973, Length=256, Percent_Identity=28.90625, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI4506971, Length=245, Percent_Identity=27.3469387755102, Blast_Score=85, Evalue=9e-17,
Organism=Homo sapiens, GI37537552, Length=243, Percent_Identity=25.1028806584362, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI215422370, Length=236, Percent_Identity=32.2033898305085, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI9790143, Length=236, Percent_Identity=32.2033898305085, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI215422368, Length=236, Percent_Identity=32.2033898305085, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI58219066, Length=233, Percent_Identity=29.6137339055794, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI24308414, Length=271, Percent_Identity=27.6752767527675, Blast_Score=65, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004710
- InterPro:   IPR002657 [H]

Pfam domain/function: PF01758 SBF [H]

EC number: NA

Molecular weight: Translated: 31985; Mature: 31985

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVNVNRFFPLLALIGAVTAYLMPSWFTELKSAIVPLLVIIMLSMGLTLDLQDFANAFKQ
CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHH
KRAVLTGLILQFSVMPLSALLISQLLGLDRELTIGMVLVGSVAGGTASNVVCYLAKGDVA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCEE
LSITMTALSTLAGVVLTPLIIKLLIGEMIDIPFADMLLSLVKIVLFPVSAGVIINHFFKS
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
LVAKVAPALPLISILAIVMAITIIVALNANQFDKVGPIILLAVFLHNGFGLALGYFCCRL
HHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
LGFNHTVCKTISIEVGLQNSGLATALCIKFFSPISAIPSAIFSIWHNLSGAILAGYWARE
HCCCCHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
>Mature Secondary Structure
MLVNVNRFFPLLALIGAVTAYLMPSWFTELKSAIVPLLVIIMLSMGLTLDLQDFANAFKQ
CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHH
KRAVLTGLILQFSVMPLSALLISQLLGLDRELTIGMVLVGSVAGGTASNVVCYLAKGDVA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCEE
LSITMTALSTLAGVVLTPLIIKLLIGEMIDIPFADMLLSLVKIVLFPVSAGVIINHFFKS
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
LVAKVAPALPLISILAIVMAITIIVALNANQFDKVGPIILLAVFLHNGFGLALGYFCCRL
HHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
LGFNHTVCKTISIEVGLQNSGLATALCIKFFSPISAIPSAIFSIWHNLSGAILAGYWARE
HCCCCHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]