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The map label for this gene is rpe [H]

Identifier: 160877298

GI number: 160877298

Start: 4960791

End: 4961465

Strand: Reverse

Name: rpe [H]

Synonym: Sbal195_4195

Alternate gene names: 160877298

Gene position: 4961465-4960791 (Counterclockwise)

Preceding gene: 160877301

Following gene: 160877297

Centisome position: 92.78

GC content: 48.3

Gene sequence:

>675_bases
ATGCGTCCATTCTTGATTGCTCCATCGATTTTATCTGCCGATTTTGCCCGTTTGGGCGATGATGTAAAAGCCGTGTTAGA
TGCGGGGACCGACGTAGTGCATTTTGATGTGATGGATAATCACTATGTTCCTAACTTAACAATTGGCCCTATGGTGTGCC
AAGCGCTGCGTAACTACGGTATTACCGCCGATATTGATGTGCATTTGATGGTCAAGCCAGTTGACCGCATCGTGCCTGAT
TTTGCTAAAGCGGGTGCGTCTATTATTACTTTCCATCCAGAAGCTTCAGAACACGTCGATCGCACGCTACAGTTGATCAA
AGAGTGTGGCTGTAAAGCGGGTCTCGTGTTTAACCCTGCCACACCACTGCATTATCTCGACCATGTGATGGATAAGCTCG
ATGTGATTCTATTGATGTCGGTCAACCCTGGTTTTGGTGGTCAATCTTTTATCCCATCGACCTTAGATAAGCTGCGCCAA
GTGCGTGCGCGTATCGATGCCAGTGGGTTCGATATTCGTTTAGAAGTGGATGGCGGCGTTAAGGTCGACAATATTGCCGA
AATCGCCGCCGCCGGTGCTGACATGTTTGTTGCGGGTTCTGCCATTTTCGGCAAGCCAGATTACAAAACCGTTGTTGATG
AGATGCGTGCCGAACTTGCTAAAGTTGGGGCATAA

Upstream 100 bases:

>100_bases
ATCGCGTATCAATTGCCAGAAATGTGGCTTTAGCTATAGAGGCTTAGCTTGGCTCAGGGTAAAATAAGGCACTTTTTATC
CAAATAGCAGCGAGTGTTTT

Downstream 100 bases:

>100_bases
GCATGTGGGATAAGATTAAAGCGATAGCGTTTGATCTTGATGGCACGCTGATCGACAGTGTGCCGGACCTAGCCGTTGCC
ACGCAGGAAGCCTTAGCCGA

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MRPFLIAPSILSADFARLGDDVKAVLDAGTDVVHFDVMDNHYVPNLTIGPMVCQALRNYGITADIDVHLMVKPVDRIVPD
FAKAGASIITFHPEASEHVDRTLQLIKECGCKAGLVFNPATPLHYLDHVMDKLDVILLMSVNPGFGGQSFIPSTLDKLRQ
VRARIDASGFDIRLEVDGGVKVDNIAEIAAAGADMFVAGSAIFGKPDYKTVVDEMRAELAKVGA

Sequences:

>Translated_224_residues
MRPFLIAPSILSADFARLGDDVKAVLDAGTDVVHFDVMDNHYVPNLTIGPMVCQALRNYGITADIDVHLMVKPVDRIVPD
FAKAGASIITFHPEASEHVDRTLQLIKECGCKAGLVFNPATPLHYLDHVMDKLDVILLMSVNPGFGGQSFIPSTLDKLRQ
VRARIDASGFDIRLEVDGGVKVDNIAEIAAAGADMFVAGSAIFGKPDYKTVVDEMRAELAKVGA
>Mature_224_residues
MRPFLIAPSILSADFARLGDDVKAVLDAGTDVVHFDVMDNHYVPNLTIGPMVCQALRNYGITADIDVHLMVKPVDRIVPD
FAKAGASIITFHPEASEHVDRTLQLIKECGCKAGLVFNPATPLHYLDHVMDKLDVILLMSVNPGFGGQSFIPSTLDKLRQ
VRARIDASGFDIRLEVDGGVKVDNIAEIAAAGADMFVAGSAIFGKPDYKTVVDEMRAELAKVGA

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=212, Percent_Identity=40.5660377358491, Blast_Score=159, Evalue=1e-39,
Organism=Homo sapiens, GI219879828, Length=212, Percent_Identity=39.1509433962264, Blast_Score=150, Evalue=8e-37,
Organism=Homo sapiens, GI24307923, Length=168, Percent_Identity=33.9285714285714, Blast_Score=97, Evalue=9e-21,
Organism=Escherichia coli, GI1789788, Length=222, Percent_Identity=86.9369369369369, Blast_Score=393, Evalue=1e-111,
Organism=Escherichia coli, GI1790523, Length=197, Percent_Identity=36.0406091370558, Blast_Score=142, Evalue=1e-35,
Organism=Escherichia coli, GI1790754, Length=213, Percent_Identity=30.5164319248826, Blast_Score=96, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17552948, Length=220, Percent_Identity=40.4545454545455, Blast_Score=156, Evalue=6e-39,
Organism=Saccharomyces cerevisiae, GI6322341, Length=229, Percent_Identity=38.4279475982533, Blast_Score=157, Evalue=2e-39,
Organism=Drosophila melanogaster, GI24586301, Length=211, Percent_Identity=39.3364928909953, Blast_Score=157, Evalue=5e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 24173; Mature: 24173

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1 ; PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPFLIAPSILSADFARLGDDVKAVLDAGTDVVHFDVMDNHYVPNLTIGPMVCQALRNYG
CCCCEECCHHHHHHHHHHCHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC
ITADIDVHLMVKPVDRIVPDFAKAGASIITFHPEASEHVDRTLQLIKECGCKAGLVFNPA
CEECEEEEEEECCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCEEECCC
TPLHYLDHVMDKLDVILLMSVNPGFGGQSFIPSTLDKLRQVRARIDASGFDIRLEVDGGV
CHHHHHHHHHHHHCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCC
KVDNIAEIAAAGADMFVAGSAIFGKPDYKTVVDEMRAELAKVGA
CHHHHHHHHHCCCCCEEECCEEECCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRPFLIAPSILSADFARLGDDVKAVLDAGTDVVHFDVMDNHYVPNLTIGPMVCQALRNYG
CCCCEECCHHHHHHHHHHCHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC
ITADIDVHLMVKPVDRIVPDFAKAGASIITFHPEASEHVDRTLQLIKECGCKAGLVFNPA
CEECEEEEEEECCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCEEECCC
TPLHYLDHVMDKLDVILLMSVNPGFGGQSFIPSTLDKLRQVRARIDASGFDIRLEVDGGV
CHHHHHHHHHHHHCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCC
KVDNIAEIAAAGADMFVAGSAIFGKPDYKTVVDEMRAELAKVGA
CHHHHHHHHHCCCCCEEECCEEECCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]