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The map label for this gene is ligT [C]

Identifier: 160876975

GI number: 160876975

Start: 4564085

End: 4564630

Strand: Direct

Name: ligT [C]

Synonym: Sbal195_3871

Alternate gene names: 160876975

Gene position: 4564085-4564630 (Clockwise)

Preceding gene: 160876967

Following gene: 160876977

Centisome position: 85.35

GC content: 47.99

Gene sequence:

>546_bases
ATGCAACAAAGGCTATTTCTCGGCTTCGCGCCTACCGCTGCACAAATGACAAGGCTGAGTGATTTACAACAGCGACTGTT
CTGCCACCTTAATCCTGAGGCGAAAGCGGTTAGCGTCATTAATATGCATTTAACGCTCTGCTTTTTAGGGCAAGTGGACG
ACGGGCAACGCATCGCCCTCCTTGATGCAATTGACCGCTTAGCTAAGCCTAGATTCAACACTCAGCTTAACCAGCTCGAC
TTATGGCCCAATGCCCAAGTCTGTTGCTTGAAAGGCGATGAAGTTGAGCCGCCGTTAGCGCAATTAGCTAAGCAGACGCA
AGCAATCGCAGGCCGCCTGCAATTGCATAGCAGTGAACACCACTTTTGCCCGCACATCAGTTTATTTAGGAAGGCTAAAG
AATGGACGCTAAATGAGTCGGCTTTATTGCAACTCAAGGACATGAATACGCTAACGTTAACGCCCGAACGTTTGCATTTA
TATCATTCAAAAAGCACAAGCACGGGTGTGGAATATCACATCCTACATTCTTGGACGCTCGGTTAG

Upstream 100 bases:

>100_bases
AGCCGATAAATTCAACAACTAGATTAACGCTCAAAGACGCTAAACGTCAAAGTGTTCCCAGAGATAATCCGTGTTGAACG
CCACAAAGGACGATAATCAG

Downstream 100 bases:

>100_bases
CATGGATCAAAAACAAAAAAGCCCTAGTATCCACTCAGGCTTTATTTTCAACTTATAAATCTATGCATCAATTAACACAT
GAATAAACCAATGGAGCTTA

Product: 2'-5' RNA ligase

Products: NA

Alternate protein names: 2 5' RNA Ligase; Phosphoesterase HXTX

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MQQRLFLGFAPTAAQMTRLSDLQQRLFCHLNPEAKAVSVINMHLTLCFLGQVDDGQRIALLDAIDRLAKPRFNTQLNQLD
LWPNAQVCCLKGDEVEPPLAQLAKQTQAIAGRLQLHSSEHHFCPHISLFRKAKEWTLNESALLQLKDMNTLTLTPERLHL
YHSKSTSTGVEYHILHSWTLG

Sequences:

>Translated_181_residues
MQQRLFLGFAPTAAQMTRLSDLQQRLFCHLNPEAKAVSVINMHLTLCFLGQVDDGQRIALLDAIDRLAKPRFNTQLNQLD
LWPNAQVCCLKGDEVEPPLAQLAKQTQAIAGRLQLHSSEHHFCPHISLFRKAKEWTLNESALLQLKDMNTLTLTPERLHL
YHSKSTSTGVEYHILHSWTLG
>Mature_181_residues
MQQRLFLGFAPTAAQMTRLSDLQQRLFCHLNPEAKAVSVINMHLTLCFLGQVDDGQRIALLDAIDRLAKPRFNTQLNQLD
LWPNAQVCCLKGDEVEPPLAQLAKQTQAIAGRLQLHSSEHHFCPHISLFRKAKEWTLNESALLQLKDMNTLTLTPERLHL
YHSKSTSTGVEYHILHSWTLG

Specific function: Specifically Ligates tRNA Half-Molecules Containing Nucleoside Base Modifications And Shows A Preference Among Different tRNA Species. Acts In The Absence Of ATP To Form A 2'-5' Phosphodiester Linkage. [C]

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 6.5.1.- [C]

Molecular weight: Translated: 20559; Mature: 20559

Theoretical pI: Translated: 7.96; Mature: 7.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQRLFLGFAPTAAQMTRLSDLQQRLFCHLNPEAKAVSVINMHLTLCFLGQVDDGQRIAL
CCCEEEEEECCHHHHHHHHHHHHHHHEEECCCCCCEEEEEEEEEEEEEEECCCCCCEEHH
LDAIDRLAKPRFNTQLNQLDLWPNAQVCCLKGDEVEPPLAQLAKQTQAIAGRLQLHSSEH
HHHHHHHHCCCCCCCCCEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHEECCCCC
HFCPHISLFRKAKEWTLNESALLQLKDMNTLTLTPERLHLYHSKSTSTGVEYHILHSWTL
CCCCCHHHHHHHHHCCCCHHHEEEEECCCEEEECHHHEEEEECCCCCCCEEEEEEEEEEC
G
C
>Mature Secondary Structure
MQQRLFLGFAPTAAQMTRLSDLQQRLFCHLNPEAKAVSVINMHLTLCFLGQVDDGQRIAL
CCCEEEEEECCHHHHHHHHHHHHHHHEEECCCCCCEEEEEEEEEEEEEEECCCCCCEEHH
LDAIDRLAKPRFNTQLNQLDLWPNAQVCCLKGDEVEPPLAQLAKQTQAIAGRLQLHSSEH
HHHHHHHHCCCCCCCCCEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHEECCCCC
HFCPHISLFRKAKEWTLNESALLQLKDMNTLTLTPERLHLYHSKSTSTGVEYHILHSWTL
CCCCCHHHHHHHHHCCCCHHHEEEEECCCEEEECHHHEEEEECCCCCCCEEEEEEEEEEC
G
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA