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The map label for this gene is xerD [H]

Identifier: 160876749

GI number: 160876749

Start: 4294411

End: 4295340

Strand: Reverse

Name: xerD [H]

Synonym: Sbal195_3643

Alternate gene names: 160876749

Gene position: 4295340-4294411 (Counterclockwise)

Preceding gene: 160876750

Following gene: 160876748

Centisome position: 80.33

GC content: 51.29

Gene sequence:

>930_bases
ATGACGCCGTTTTTTTATGGAGTTTTTGTGCCTAAGACATATCAGCCCGACCCGCTCATTGATGTTTTTCTTGATGATCT
CTGGTCGAACAAGGGACTGAGTGACAACACCTTATCGGCCTATCGCACCGATTTGCGCCATTTTGATCGTTATCAAGCTC
AGCAAGGGGTAACGCTGCTCTCGGTTTCTCAGGCGGATGTCAGAGCGTATTTAGCCTTTAGAGTCGAGCAGGATTTTGCG
CGCACCAGTAGTGCTCGGCTGCTCAGCAGTTTGCGGCGTTTCTATACCTATTTAGTGCAGACCAAGCAGATTTCAGCCGA
TCCTATGGCCTTAGTTGAGTCGCCCAAATTAACCCGCCATTTACCCGATTCATTGAGTGAATCACAGGTCGATCGCTTGT
TGTCTGAGCCCAATGTGGAAGATGCGGTCGAATGTCGTGACAAAGCCATGCTAGAGCTGTTGTATGCGACAGGTTTGAGG
GTGAGTGAGCTCGTTGGCTTGACGATGGAGCAGATGAGCCTGCGCCAAGGCTTAGTGCGCATTGTGGGTAAGGGCGGCAA
AGAGCGTCTCGTACCACTGGGTGAATTAGCGATTACCGAGGTCGAGAGCTACATGAAGTTTGCGCGGCAAGAGTTGCTCG
GCAATAAACAATCCGATGTGGTGTTTCCGTCAAAACGCGGGCAGATGATGACGCGGCAAACCTTTTGGCATCGGATTAAG
CTGTATGCCCTGCGTGCTGGGATTGAAACCGCATTATCACCGCACACATTGCGCCATGCTTTTGCTACCCATTTGCTCAA
TCACGGTGCCGATCTGCGGGTAGTGCAATTGCTGTTAGGCCATAGCGACCTGTCGACCACGCAGATTTATACCCATGTGG
CGCGGGCAAGGTTGCAGGAATTGCATCAACAGCATCATCCAAGAGGCTGA

Upstream 100 bases:

>100_bases
GGCAGCTGCTTAAGCCTTGTACTCGCGTTTTTACGCGGGACTCAGTTAAGCTGATGCAGGCTTAAATGTAGTTAAGTTAA
TATCAACGGCGTATCATTTG

Downstream 100 bases:

>100_bases
AAAAGGATTTAGTTACAGCATAAATTTGCTTTCCGCTCGGCTTGTCTGTAACTTTTTGCCACCATACGGGGTCTATTAAG
TATATCGCGTTTGAACGACC

Product: tyrosine recombinase XerD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 308

Protein sequence:

>309_residues
MTPFFYGVFVPKTYQPDPLIDVFLDDLWSNKGLSDNTLSAYRTDLRHFDRYQAQQGVTLLSVSQADVRAYLAFRVEQDFA
RTSSARLLSSLRRFYTYLVQTKQISADPMALVESPKLTRHLPDSLSESQVDRLLSEPNVEDAVECRDKAMLELLYATGLR
VSELVGLTMEQMSLRQGLVRIVGKGGKERLVPLGELAITEVESYMKFARQELLGNKQSDVVFPSKRGQMMTRQTFWHRIK
LYALRAGIETALSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHPRG

Sequences:

>Translated_309_residues
MTPFFYGVFVPKTYQPDPLIDVFLDDLWSNKGLSDNTLSAYRTDLRHFDRYQAQQGVTLLSVSQADVRAYLAFRVEQDFA
RTSSARLLSSLRRFYTYLVQTKQISADPMALVESPKLTRHLPDSLSESQVDRLLSEPNVEDAVECRDKAMLELLYATGLR
VSELVGLTMEQMSLRQGLVRIVGKGGKERLVPLGELAITEVESYMKFARQELLGNKQSDVVFPSKRGQMMTRQTFWHRIK
LYALRAGIETALSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHPRG
>Mature_308_residues
TPFFYGVFVPKTYQPDPLIDVFLDDLWSNKGLSDNTLSAYRTDLRHFDRYQAQQGVTLLSVSQADVRAYLAFRVEQDFAR
TSSARLLSSLRRFYTYLVQTKQISADPMALVESPKLTRHLPDSLSESQVDRLLSEPNVEDAVECRDKAMLELLYATGLRV
SELVGLTMEQMSLRQGLVRIVGKGGKERLVPLGELAITEVESYMKFARQELLGNKQSDVVFPSKRGQMMTRQTFWHRIKL
YALRAGIETALSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHPRG

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=291, Percent_Identity=61.5120274914089, Blast_Score=351, Evalue=4e-98,
Organism=Escherichia coli, GI1790244, Length=280, Percent_Identity=37.8571428571429, Blast_Score=186, Evalue=2e-48,
Organism=Escherichia coli, GI1790768, Length=166, Percent_Identity=32.5301204819277, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790767, Length=168, Percent_Identity=27.9761904761905, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 35208; Mature: 35077

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPFFYGVFVPKTYQPDPLIDVFLDDLWSNKGLSDNTLSAYRTDLRHFDRYQAQQGVTLL
CCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEE
SVSQADVRAYLAFRVEQDFARTSSARLLSSLRRFYTYLVQTKQISADPMALVESPKLTRH
EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHH
LPDSLSESQVDRLLSEPNVEDAVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVR
CCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
IVGKGGKERLVPLGELAITEVESYMKFARQELLGNKQSDVVFPSKRGQMMTRQTFWHRIK
HHCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHH
LYALRAGIETALSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQE
HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
LHQQHHPRG
HHHHHCCCC
>Mature Secondary Structure 
TPFFYGVFVPKTYQPDPLIDVFLDDLWSNKGLSDNTLSAYRTDLRHFDRYQAQQGVTLL
CCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEE
SVSQADVRAYLAFRVEQDFARTSSARLLSSLRRFYTYLVQTKQISADPMALVESPKLTRH
EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHH
LPDSLSESQVDRLLSEPNVEDAVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVR
CCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
IVGKGGKERLVPLGELAITEVESYMKFARQELLGNKQSDVVFPSKRGQMMTRQTFWHRIK
HHCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHH
LYALRAGIETALSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQE
HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
LHQQHHPRG
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]