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The map label for this gene is yhjC [H]

Identifier: 160876400

GI number: 160876400

Start: 3884803

End: 3885702

Strand: Reverse

Name: yhjC [H]

Synonym: Sbal195_3294

Alternate gene names: 160876400

Gene position: 3885702-3884803 (Counterclockwise)

Preceding gene: 160876403

Following gene: 160876396

Centisome position: 72.67

GC content: 47.22

Gene sequence:

>900_bases
ATGAGTGATGATTTAGGCGCTGAACTACAACTTGTCTACCTTTTTGTGCATTTAGTCAATGCGGGTAGTTTTTCACAGGC
GGCGAAGGAGCTTGATATGCCCATTGCCACAGTGAGCCGCAAGTTAGCGAAGTTGGAAGAGAAGCTCGATAAGCAGCTTT
TTATGCGCAGCACCCGCAAGTTACGATTGACGGAGGAAGGGTTGGCACTCTTTCAACGCTACCAGAGTGTGGTTGCCCAA
TTTGATGAACTGAGTGGTGCGGGCAGCGATAAACCCGAGGGCACCCTGCGCATCGCCGCGCCAATTTCGATTATTTCCAT
CGTGTTTATTCAAGCTTTGAATGAATTTGGCCGACTGTATCCCGATATCCGTTTGCACATTTCCCAGAGTAATGAGTTAG
TCGATTTGATTGATAAAGGCATAGATGTGGCGATTGTAGGCGGGGCTCAGCCTGATTCTTCTTGGGTGTCGAGTACCTTA
GGTGAGCTTGATTATTGCCTGTTTGCCACGCCAGAATACTTGGCTCAGGCACCTAAACTTGAGCATCCCGATGATCTCGA
AGCCCATCAACTGATAAAAGTCTGGCCGCTGTTTAATTGGCATTTAAAGCATCCGAGCGGTGAGTCTTTTTATTTTAATG
GCCCAACTAAGCTGACCCTCACGGATTTGCACGGTGCGATTCAGGCGACCTTAGGCCATGGCGGGATCTTGTATGGTCCC
GAACTATTTGTAAAACAGCAGATTAAAGAAGGGAAACTTAAAGTATTATTGCCAGAATGGATTGGCGAGCAGAGGCGGAT
TTCGATTTTATATCATCAGCGCAGCCAGCAGCCGCTAAAGGTAAGAGTCTTTATTGAGTTTATGCAGTCAAAGGCGCCAG
AGTTATTCTCTATGCGTTGA

Upstream 100 bases:

>100_bases
TTAATTGATGTTTAAAACACAATGACTTAGCGTACGCTGTGATTGTTGATGACTTTATATAGTGCCTAAAGTGGCAGCTA
GAACAGAATTAGGACATGCA

Downstream 100 bases:

>100_bases
TTTAACGAGGGGGAACTGATTTTTAACGTCTTTTAGGTTTTACCGTGTTTTTGCTCATGGTATTTTGCGTTTGTTTCGCG
TCCTGCAAGCTGGAGCGTGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MSDDLGAELQLVYLFVHLVNAGSFSQAAKELDMPIATVSRKLAKLEEKLDKQLFMRSTRKLRLTEEGLALFQRYQSVVAQ
FDELSGAGSDKPEGTLRIAAPISIISIVFIQALNEFGRLYPDIRLHISQSNELVDLIDKGIDVAIVGGAQPDSSWVSSTL
GELDYCLFATPEYLAQAPKLEHPDDLEAHQLIKVWPLFNWHLKHPSGESFYFNGPTKLTLTDLHGAIQATLGHGGILYGP
ELFVKQQIKEGKLKVLLPEWIGEQRRISILYHQRSQQPLKVRVFIEFMQSKAPELFSMR

Sequences:

>Translated_299_residues
MSDDLGAELQLVYLFVHLVNAGSFSQAAKELDMPIATVSRKLAKLEEKLDKQLFMRSTRKLRLTEEGLALFQRYQSVVAQ
FDELSGAGSDKPEGTLRIAAPISIISIVFIQALNEFGRLYPDIRLHISQSNELVDLIDKGIDVAIVGGAQPDSSWVSSTL
GELDYCLFATPEYLAQAPKLEHPDDLEAHQLIKVWPLFNWHLKHPSGESFYFNGPTKLTLTDLHGAIQATLGHGGILYGP
ELFVKQQIKEGKLKVLLPEWIGEQRRISILYHQRSQQPLKVRVFIEFMQSKAPELFSMR
>Mature_298_residues
SDDLGAELQLVYLFVHLVNAGSFSQAAKELDMPIATVSRKLAKLEEKLDKQLFMRSTRKLRLTEEGLALFQRYQSVVAQF
DELSGAGSDKPEGTLRIAAPISIISIVFIQALNEFGRLYPDIRLHISQSNELVDLIDKGIDVAIVGGAQPDSSWVSSTLG
ELDYCLFATPEYLAQAPKLEHPDDLEAHQLIKVWPLFNWHLKHPSGESFYFNGPTKLTLTDLHGAIQATLGHGGILYGPE
LFVKQQIKEGKLKVLLPEWIGEQRRISILYHQRSQQPLKVRVFIEFMQSKAPELFSMR

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=286, Percent_Identity=31.1188811188811, Blast_Score=142, Evalue=4e-35,
Organism=Escherichia coli, GI1789639, Length=283, Percent_Identity=30.3886925795053, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI1787128, Length=288, Percent_Identity=27.7777777777778, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1786401, Length=299, Percent_Identity=28.7625418060201, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI87081978, Length=293, Percent_Identity=27.9863481228669, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1789440, Length=287, Percent_Identity=26.4808362369338, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1788706, Length=261, Percent_Identity=28.3524904214559, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787589, Length=294, Percent_Identity=22.7891156462585, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1786448, Length=259, Percent_Identity=28.1853281853282, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1789173, Length=274, Percent_Identity=23.7226277372263, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI145693105, Length=155, Percent_Identity=29.6774193548387, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33669; Mature: 33538

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDDLGAELQLVYLFVHLVNAGSFSQAAKELDMPIATVSRKLAKLEEKLDKQLFMRSTRK
CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LRLTEEGLALFQRYQSVVAQFDELSGAGSDKPEGTLRIAAPISIISIVFIQALNEFGRLY
EEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHC
PDIRLHISQSNELVDLIDKGIDVAIVGGAQPDSSWVSSTLGELDYCLFATPEYLAQAPKL
CCEEEEECCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHEECCHHHHHCCCCC
EHPDDLEAHQLIKVWPLFNWHLKHPSGESFYFNGPTKLTLTDLHGAIQATLGHGGILYGP
CCCCCCCHHHHHHHCCCEEEEECCCCCCEEEECCCCEEEEEHHHHHHHHHHCCCCEEECH
ELFVKQQIKEGKLKVLLPEWIGEQRRISILYHQRSQQPLKVRVFIEFMQSKAPELFSMR
HHHHHHHHCCCCEEEEEHHHCCCCCEEEEEEECCCCCCEEEHHHHHHHHHCCCHHHCCC
>Mature Secondary Structure 
SDDLGAELQLVYLFVHLVNAGSFSQAAKELDMPIATVSRKLAKLEEKLDKQLFMRSTRK
CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LRLTEEGLALFQRYQSVVAQFDELSGAGSDKPEGTLRIAAPISIISIVFIQALNEFGRLY
EEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHC
PDIRLHISQSNELVDLIDKGIDVAIVGGAQPDSSWVSSTLGELDYCLFATPEYLAQAPKL
CCEEEEECCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHEECCHHHHHCCCCC
EHPDDLEAHQLIKVWPLFNWHLKHPSGESFYFNGPTKLTLTDLHGAIQATLGHGGILYGP
CCCCCCCHHHHHHHCCCEEEEECCCCCCEEEECCCCEEEEEHHHHHHHHHHCCCCEEECH
ELFVKQQIKEGKLKVLLPEWIGEQRRISILYHQRSQQPLKVRVFIEFMQSKAPELFSMR
HHHHHHHHCCCCEEEEEHHHCCCCCEEEEEEECCCCCCEEEHHHHHHHHHCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]