Click here to switch to the map view.

The map label for this gene is atoS [H]

Identifier: 160876180

GI number: 160876180

Start: 3643255

End: 3644337

Strand: Reverse

Name: atoS [H]

Synonym: Sbal195_3071

Alternate gene names: 160876180

Gene position: 3644337-3643255 (Counterclockwise)

Preceding gene: 160876181

Following gene: 160876179

Centisome position: 68.15

GC content: 46.17

Gene sequence:

>1083_bases
ATGTCAGCCAATCCACTAGCGCAAATTGAGTCATTCAAGCACACTAGCAAACAATGGAACCAACTGCGTGAGGCCGCTAA
TATGTCCAATCGAATGGAGCATATTTTACAGGCTATGCCATCCGGCGTGGTGATTATCAATGGCGACGGTATAGTCACGG
ATGCCAATCCGGTTGCAGTTGAATTACTAGAGCGCTCCTTGTGTGGCGTTCGCTGGATTGATGTGATCCACAGCGCCTTT
GCGCCGCAGGATGATGATGGCCACGAAGTGTCACTGCGTAATGGCCGCCGCGTTAAGTTAGCCATTACGCCACTCACGCC
AGAGCCTGGTCAATTAATTGTGTTAACTGATCTGACTGAAACTCGATTATTACAGAAAAATCTATCCCATCTACAACGCT
TATCTGCACTGGGTAAAATGGTTGCGACTTTGGCACATCAAGTGCGCACGCCTTTATCTGCCGCTTTGCTATATGCCTCT
AATCTTGCAAGTCCTAAGTTATCCGATGCCGCTAAAGTAAAATTCCAGCAAAAGCTTGTTGATAGACTCAATGAACTGGA
GCGTCAGGTTAACGACATGCTATTGATGGCGAAAGGCCGTCAGGATGAACTGGGAGATTTGATTACACTGGCTGAGGTTA
TCGACAATGTATTGGCAAATTGTGAGCCGATAGCGGCTAAGCAAGGTTGTGACTTGTCATTTGATGATGCATCAAGCAGT
TCGATGTTAGCCAATTCAAATGCATTAAGCTCGGCAATCAACAATTTAGTGATGAACAGTATCGAGGCTGGCGCCACTGA
GATTCGTATTCAGGCGAAAGAAGAGGGCGATCAGTTACTACTGAATGTCATCGACAATGGCAAAGGTTTAGATGCCAATA
TGCAGCAGAAGGTACTTGAACCTTTCTTTACTACTAAGTCGCAGGGAACTGGGCTCGGGTTAGCGGTTGTGCAATCTGTG
GTGCGTAATCATGGAGGACAACTGCAATTAAGTTGCTTACCGAATAAAGGTTGCACTGTGTCTTTAGTCTTCCCAAGGGC
TAAATCTGCGGTGATATTACCTTTGGAGATTACCCATGTCTGA

Upstream 100 bases:

>100_bases
TTATTGTTATATAAGTAGTTTTAACCTCTAAAGTTTAATTTCTAATTTGGCATAGATACTGCAGTCACTCCGTCATAAGC
AATTTTTTGACGGAGTGACT

Downstream 100 bases:

>100_bases
AGCAAAGTTATTGCTCGTTGAAGATGATGCCTCATTGCGTGAAGCCTTGTTGGATACCTTAATGTTGGCTCAATATGAGT
GCATTGATGTTGCCTCCGGT

Product: PAS/PAC sensor signal transduction histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 359

Protein sequence:

>360_residues
MSANPLAQIESFKHTSKQWNQLREAANMSNRMEHILQAMPSGVVIINGDGIVTDANPVAVELLERSLCGVRWIDVIHSAF
APQDDDGHEVSLRNGRRVKLAITPLTPEPGQLIVLTDLTETRLLQKNLSHLQRLSALGKMVATLAHQVRTPLSAALLYAS
NLASPKLSDAAKVKFQQKLVDRLNELERQVNDMLLMAKGRQDELGDLITLAEVIDNVLANCEPIAAKQGCDLSFDDASSS
SMLANSNALSSAINNLVMNSIEAGATEIRIQAKEEGDQLLLNVIDNGKGLDANMQQKVLEPFFTTKSQGTGLGLAVVQSV
VRNHGGQLQLSCLPNKGCTVSLVFPRAKSAVILPLEITHV

Sequences:

>Translated_360_residues
MSANPLAQIESFKHTSKQWNQLREAANMSNRMEHILQAMPSGVVIINGDGIVTDANPVAVELLERSLCGVRWIDVIHSAF
APQDDDGHEVSLRNGRRVKLAITPLTPEPGQLIVLTDLTETRLLQKNLSHLQRLSALGKMVATLAHQVRTPLSAALLYAS
NLASPKLSDAAKVKFQQKLVDRLNELERQVNDMLLMAKGRQDELGDLITLAEVIDNVLANCEPIAAKQGCDLSFDDASSS
SMLANSNALSSAINNLVMNSIEAGATEIRIQAKEEGDQLLLNVIDNGKGLDANMQQKVLEPFFTTKSQGTGLGLAVVQSV
VRNHGGQLQLSCLPNKGCTVSLVFPRAKSAVILPLEITHV
>Mature_359_residues
SANPLAQIESFKHTSKQWNQLREAANMSNRMEHILQAMPSGVVIINGDGIVTDANPVAVELLERSLCGVRWIDVIHSAFA
PQDDDGHEVSLRNGRRVKLAITPLTPEPGQLIVLTDLTETRLLQKNLSHLQRLSALGKMVATLAHQVRTPLSAALLYASN
LASPKLSDAAKVKFQQKLVDRLNELERQVNDMLLMAKGRQDELGDLITLAEVIDNVLANCEPIAAKQGCDLSFDDASSSS
MLANSNALSSAINNLVMNSIEAGATEIRIQAKEEGDQLLLNVIDNGKGLDANMQQKVLEPFFTTKSQGTGLGLAVVQSVV
RNHGGQLQLSCLPNKGCTVSLVFPRAKSAVILPLEITHV

Specific function: Member of the two-component regulatory system AtoS/AtoC; may activate AtoC by phosphorylation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1788549, Length=240, Percent_Identity=29.1666666666667, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1790436, Length=231, Percent_Identity=30.7359307359307, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1790346, Length=221, Percent_Identity=24.8868778280543, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1786600, Length=352, Percent_Identity=23.2954545454545, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1789808, Length=213, Percent_Identity=27.2300469483568, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI1786912, Length=223, Percent_Identity=28.6995515695067, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1790300, Length=351, Percent_Identity=24.7863247863248, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI145693157, Length=226, Percent_Identity=25.6637168141593, Blast_Score=63, Evalue=4e-11,
Organism=Escherichia coli, GI1788393, Length=223, Percent_Identity=26.9058295964126, Blast_Score=63, Evalue=4e-11,
Organism=Escherichia coli, GI1788713, Length=254, Percent_Identity=24.0157480314961, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003660
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767
- InterPro:   IPR004358
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 38955; Mature: 38824

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSANPLAQIESFKHTSKQWNQLREAANMSNRMEHILQAMPSGVVIINGDGIVTDANPVAV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCHHHH
ELLERSLCGVRWIDVIHSAFAPQDDDGHEVSLRNGRRVKLAITPLTPEPGQLIVLTDLTE
HHHHHHHCCHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCHH
TRLLQKNLSHLQRLSALGKMVATLAHQVRTPLSAALLYASNLASPKLSDAAKVKFQQKLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
DRLNELERQVNDMLLMAKGRQDELGDLITLAEVIDNVLANCEPIAAKQGCDLSFDDASSS
HHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCC
SMLANSNALSSAINNLVMNSIEAGATEIRIQAKEEGDQLLLNVIDNGKGLDANMQQKVLE
CHHHCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEHHHHCCCCCCCCHHHHHHHH
PFFTTKSQGTGLGLAVVQSVVRNHGGQLQLSCLPNKGCTVSLVFPRAKSAVILPLEITHV
HHHCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEEEEECC
>Mature Secondary Structure 
SANPLAQIESFKHTSKQWNQLREAANMSNRMEHILQAMPSGVVIINGDGIVTDANPVAV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCHHHH
ELLERSLCGVRWIDVIHSAFAPQDDDGHEVSLRNGRRVKLAITPLTPEPGQLIVLTDLTE
HHHHHHHCCHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCHH
TRLLQKNLSHLQRLSALGKMVATLAHQVRTPLSAALLYASNLASPKLSDAAKVKFQQKLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
DRLNELERQVNDMLLMAKGRQDELGDLITLAEVIDNVLANCEPIAAKQGCDLSFDDASSS
HHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCC
SMLANSNALSSAINNLVMNSIEAGATEIRIQAKEEGDQLLLNVIDNGKGLDANMQQKVLE
CHHHCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEHHHHCCCCCCCCHHHHHHHH
PFFTTKSQGTGLGLAVVQSVVRNHGGQLQLSCLPNKGCTVSLVFPRAKSAVILPLEITHV
HHHCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8346225; 9097040; 9278503 [H]