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The map label for this gene is kpsD [H]

Identifier: 160876144

GI number: 160876144

Start: 3603489

End: 3605975

Strand: Reverse

Name: kpsD [H]

Synonym: Sbal195_3035

Alternate gene names: 160876144

Gene position: 3605975-3603489 (Counterclockwise)

Preceding gene: 160876145

Following gene: 160876143

Centisome position: 67.44

GC content: 43.39

Gene sequence:

>2487_bases
GTGCTACGACAAGTCAAAAAATTCATCATACTAGGCATAAGTGCCGCGATTTTGATGGGCGCGCAGGCTAATGCCATTAC
GCCATCTCCGCAGATGATCGAGCAGTTCAAAGCATTACCTAAGTCTGAACAAGAAAGATTAGCACGCCAATATGGTGTTG
ACCCTTCAATGATAACTGGGGCCGGTGCTACAGCCACAGTTGTTGAAAATCCTACTGTAGTTACCCCACGCGCTACGAAA
AATAACGTGGTTGACCAATCGGAAAGCGACCAGCTAAATCAAGCGACTAAGTCAGAATCTACGGTTGAGGCAATCGAAGA
CAAGAAAGAAAATCAACTCAAACGTTTTGGCTACGACCTCTTTGCGGGTTCACCAAGTACATTTGCGCCAGTTAGCGATG
TGCCTGTGCCCGCTGAGTACATGATTGGTCCTGGTGATAGTCTGAATGTTCAGTTGTTCGGTAAAGAAAATAACCAATAC
ACACTAACAGTAGGTCGTGATGGTGCCATTCAGTTTCCTAATTTAGGGCCTATATCCCTGGTTGGTTTGAGCTTTGCTGA
GGTGCGTGAATTATTACAGCAAAAAATTAGCCAAAGCATGATAGGTATAGAATCAAGTATCACTATGGGCGAATTACGCT
CAATCCGCATTTTTGTTGCTGGTGATGCCTTCCAACCAGGTTCTTACACTGTTTCAAGTTTATCGACTATTACTCAAGCC
TTATTTATTTCTGGTGGCGTTAACCAAATTGGTAGTTTACGCAACATTCAAATTAAGCGTGCTGGTAAAACGGTAGGCCA
CTTAGACTTATATGATCTTCTGCTTCGCGGGGATGCCTCTGGGGATATTCGTTTACAATCTGGTGATGTCGTGTTCATTC
CATCTTCAGGTGGTTCAGTGAGTGTGATGGGTGAAGTACGTCGTCCTGCAATCTATGAGCTTAAAAATAATGAAACAATG
GCGGATGTTATTCGCATGGCGAGTGGCTTAAACCCTGGAGCTTATCCTAAAGCGAGTACGGTAGAACGCTTCAGTAATGA
ATCAGTTAAAACCGTAATCAGTGTAGATTTAACCGAAAATGTTGGTTTAAACACCTTAGTTAAAAATGGTGATCTCCTAA
ACGTTAGATCAGCCTCAAGCCGTATCGATAATGCGATTACTGTCGCTGGTGCTGTAGTTCGTCCTGGTAAATATCAATGG
ACTAAAGGTTTGACGGTTGCTGATTTACTTCCTTCAATTTGGGGAGACCTCACCATCTCTGCTGATTTGGATTACGCGTT
ACTTGTTCGTGAAATTAACCAGCGCGGCGATATTCAAGTTGAGCGTATTGCCCTCGGACGAGCAATAGGTGAACCTAAAT
CACACTACAATCCTCAATTAAATCCGCGTGATTCAATAATTGTGTTTGATTATGCAGACCGCGAAGCGCTACTAAAACCA
ATAATTCAGAAGCTGAGAGAGCAAAGTCGTTTTGGAGATGCTGCTAAGCTAGTTAACATTAATGGTAATGTGCGTTTTCC
TGGCCAATACCCAATTACTATTAATGCAGATATCAAAGAGTTACTGATCGCGGCGGGTGGATTAGAGGAAGGTGCTTATA
CACTTGCGGCAGAATTAACTCGTCAAAATGTTTCTGAGCAAAATGGGGTGTCTATTGAGCATGTTCAGCTAAGTTTAGAC
CAGGTAATGCAAAATGATCCTGCTGCAAATATTAAGCTACAAAGCCGCGATATTCTAACTGTTCGTACCCTTCCAGATTG
GCAGGAGAATCGTTGGGTCACCATTAAAGGGGAAGTGAAGTTCCCCGGTACTTACAGTATCCAACGTGGTGAAAGCTTAA
AGGATGTTCTTGCTCGTGCAGGCGGATTAACGAGTGATGCAGCGCCACGCAGTGCGGTATTTTTACGCAAATCAGTAAAA
GATAAAGAGCAGCTTGAGTTATCAAAACTTGCTGATGAATTGCGTCGTGAGATTGCCGCAAAAGCGTTGACGAAAGATAC
ACCAACCATTGGCTATAACGATGCGCAGCTGATGTTAAATCAGCTTGAAAATGTTAAAACTGTCGGCCGATTAGTTGTTG
ATGTCAATGCCATTGAACTGGGGATAGATAGTGCTAACCTTATGCTTGAAGATGAGGATGCCTTGTACATTCCTGCGACT
AATCAAACCGTGTCAGTCATGGGCCAAGTACAGCACCCAAGTACACACAGATATAAGCAAGGTTTAACATTCGACCAATA
TTTAGCATTATCTGGTGGCGCACGTAAACGTGCCGATGAATCTCGCTCATATATTCTAAGGGCTGATGGCTCGGTCGAAA
TGCCAAACACATCCTTCTGGTTTAGTGGTGGCAGTGCTATAGAACCTGGCGATACTATAGTTGTGCCATTAGATACTGAA
TATAAAGACAACTTAACGCTTTGGAGTCAAGTCACTGGCATTATCTACAACACCGCAGTTGCAGTGTCTGTAATATCTGG
GCTGTAG

Upstream 100 bases:

>100_bases
AGACATCAAGCTGTTTACTGCTCAAACGTAGAACAAATTGTGCTACATCTAAATTCTAAAAAATAAGTTTTGCCCCAATT
TTTATAAACGGAGATATCTG

Downstream 100 bases:

>100_bases
AACTAAGGAGCTAGGAACGCCGCGTTGCGACTACAGAACGTCACTACGTGACTCACGGATAACGGAATGGGCTGCGCCCT
TACGGTAAGCGAATTTCTTG

Product: polysaccharide export protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 828; Mature: 828

Protein sequence:

>828_residues
MLRQVKKFIILGISAAILMGAQANAITPSPQMIEQFKALPKSEQERLARQYGVDPSMITGAGATATVVENPTVVTPRATK
NNVVDQSESDQLNQATKSESTVEAIEDKKENQLKRFGYDLFAGSPSTFAPVSDVPVPAEYMIGPGDSLNVQLFGKENNQY
TLTVGRDGAIQFPNLGPISLVGLSFAEVRELLQQKISQSMIGIESSITMGELRSIRIFVAGDAFQPGSYTVSSLSTITQA
LFISGGVNQIGSLRNIQIKRAGKTVGHLDLYDLLLRGDASGDIRLQSGDVVFIPSSGGSVSVMGEVRRPAIYELKNNETM
ADVIRMASGLNPGAYPKASTVERFSNESVKTVISVDLTENVGLNTLVKNGDLLNVRSASSRIDNAITVAGAVVRPGKYQW
TKGLTVADLLPSIWGDLTISADLDYALLVREINQRGDIQVERIALGRAIGEPKSHYNPQLNPRDSIIVFDYADREALLKP
IIQKLREQSRFGDAAKLVNINGNVRFPGQYPITINADIKELLIAAGGLEEGAYTLAAELTRQNVSEQNGVSIEHVQLSLD
QVMQNDPAANIKLQSRDILTVRTLPDWQENRWVTIKGEVKFPGTYSIQRGESLKDVLARAGGLTSDAAPRSAVFLRKSVK
DKEQLELSKLADELRREIAAKALTKDTPTIGYNDAQLMLNQLENVKTVGRLVVDVNAIELGIDSANLMLEDEDALYIPAT
NQTVSVMGQVQHPSTHRYKQGLTFDQYLALSGGARKRADESRSYILRADGSVEMPNTSFWFSGGSAIEPGDTIVVPLDTE
YKDNLTLWSQVTGIIYNTAVAVSVISGL

Sequences:

>Translated_828_residues
MLRQVKKFIILGISAAILMGAQANAITPSPQMIEQFKALPKSEQERLARQYGVDPSMITGAGATATVVENPTVVTPRATK
NNVVDQSESDQLNQATKSESTVEAIEDKKENQLKRFGYDLFAGSPSTFAPVSDVPVPAEYMIGPGDSLNVQLFGKENNQY
TLTVGRDGAIQFPNLGPISLVGLSFAEVRELLQQKISQSMIGIESSITMGELRSIRIFVAGDAFQPGSYTVSSLSTITQA
LFISGGVNQIGSLRNIQIKRAGKTVGHLDLYDLLLRGDASGDIRLQSGDVVFIPSSGGSVSVMGEVRRPAIYELKNNETM
ADVIRMASGLNPGAYPKASTVERFSNESVKTVISVDLTENVGLNTLVKNGDLLNVRSASSRIDNAITVAGAVVRPGKYQW
TKGLTVADLLPSIWGDLTISADLDYALLVREINQRGDIQVERIALGRAIGEPKSHYNPQLNPRDSIIVFDYADREALLKP
IIQKLREQSRFGDAAKLVNINGNVRFPGQYPITINADIKELLIAAGGLEEGAYTLAAELTRQNVSEQNGVSIEHVQLSLD
QVMQNDPAANIKLQSRDILTVRTLPDWQENRWVTIKGEVKFPGTYSIQRGESLKDVLARAGGLTSDAAPRSAVFLRKSVK
DKEQLELSKLADELRREIAAKALTKDTPTIGYNDAQLMLNQLENVKTVGRLVVDVNAIELGIDSANLMLEDEDALYIPAT
NQTVSVMGQVQHPSTHRYKQGLTFDQYLALSGGARKRADESRSYILRADGSVEMPNTSFWFSGGSAIEPGDTIVVPLDTE
YKDNLTLWSQVTGIIYNTAVAVSVISGL
>Mature_828_residues
MLRQVKKFIILGISAAILMGAQANAITPSPQMIEQFKALPKSEQERLARQYGVDPSMITGAGATATVVENPTVVTPRATK
NNVVDQSESDQLNQATKSESTVEAIEDKKENQLKRFGYDLFAGSPSTFAPVSDVPVPAEYMIGPGDSLNVQLFGKENNQY
TLTVGRDGAIQFPNLGPISLVGLSFAEVRELLQQKISQSMIGIESSITMGELRSIRIFVAGDAFQPGSYTVSSLSTITQA
LFISGGVNQIGSLRNIQIKRAGKTVGHLDLYDLLLRGDASGDIRLQSGDVVFIPSSGGSVSVMGEVRRPAIYELKNNETM
ADVIRMASGLNPGAYPKASTVERFSNESVKTVISVDLTENVGLNTLVKNGDLLNVRSASSRIDNAITVAGAVVRPGKYQW
TKGLTVADLLPSIWGDLTISADLDYALLVREINQRGDIQVERIALGRAIGEPKSHYNPQLNPRDSIIVFDYADREALLKP
IIQKLREQSRFGDAAKLVNINGNVRFPGQYPITINADIKELLIAAGGLEEGAYTLAAELTRQNVSEQNGVSIEHVQLSLD
QVMQNDPAANIKLQSRDILTVRTLPDWQENRWVTIKGEVKFPGTYSIQRGESLKDVLARAGGLTSDAAPRSAVFLRKSVK
DKEQLELSKLADELRREIAAKALTKDTPTIGYNDAQLMLNQLENVKTVGRLVVDVNAIELGIDSANLMLEDEDALYIPAT
NQTVSVMGQVQHPSTHRYKQGLTFDQYLALSGGARKRADESRSYILRADGSVEMPNTSFWFSGGSAIEPGDTIVVPLDTE
YKDNLTLWSQVTGIIYNTAVAVSVISGL

Specific function: Involved in the translocation of the polysialic acid capsule across the outer membrane to the cell surface. May function as the periplasmic binding element of the PSA transport system, in which it transiently interacts with the membrane component of the t

COG id: COG1596

COG function: function code M; Periplasmic protein involved in polysaccharide export

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli K5 kpsD [H]

Homologues:

Organism=Escherichia coli, GI1787218, Length=208, Percent_Identity=27.8846153846154, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1788376, Length=209, Percent_Identity=22.9665071770335, Blast_Score=70, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003715 [H]

Pfam domain/function: PF02563 Poly_export [H]

EC number: NA

Molecular weight: Translated: 89985; Mature: 89985

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: PS50926 TRAM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRQVKKFIILGISAAILMGAQANAITPSPQMIEQFKALPKSEQERLARQYGVDPSMITG
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEC
AGATATVVENPTVVTPRATKNNVVDQSESDQLNQATKSESTVEAIEDKKENQLKRFGYDL
CCCEEEEECCCEEECCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCE
FAGSPSTFAPVSDVPVPAEYMIGPGDSLNVQLFGKENNQYTLTVGRDGAIQFPNLGPISL
ECCCCCCCCCCCCCCCCHHEEECCCCCEEEEEEECCCCEEEEEECCCCCEECCCCCCHHE
VGLSFAEVRELLQQKISQSMIGIESSITMGELRSIRIFVAGDAFQPGSYTVSSLSTITQA
ECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCEEHHHHHHHHHH
LFISGGVNQIGSLRNIQIKRAGKTVGHLDLYDLLLRGDASGDIRLQSGDVVFIPSSGGSV
HHHCCCHHHHCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCEEEECCCEEEEECCCCCE
SVMGEVRRPAIYELKNNETMADVIRMASGLNPGAYPKASTVERFSNESVKTVISVDLTEN
EEEECCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCEEEEEEEEECCC
VGLNTLVKNGDLLNVRSASSRIDNAITVAGAVVRPGKYQWTKGLTVADLLPSIWGDLTIS
CCCEEEECCCCEEEECCHHHHHCCCEEEEEEEECCCCEECCCCCCHHHHHHHHHCCEEEE
ADLDYALLVREINQRGDIQVERIALGRAIGEPKSHYNPQLNPRDSIIVFDYADREALLKP
CCCCHHHHHHHHCCCCCEEEEEEEHHHHCCCCHHHCCCCCCCCCCEEEEEECCHHHHHHH
IIQKLREQSRFGDAAKLVNINGNVRFPGQYPITINADIKELLIAAGGLEEGAYTLAAELT
HHHHHHHHHCCCCCEEEEECCCCEECCCCCCEEECCCHHHHHHHCCCCCCCHHHHHHHHH
RQNVSEQNGVSIEHVQLSLDQVMQNDPAANIKLQSRDILTVRTLPDWQENRWVTIKGEVK
HHCCCCCCCCEEEEEEEEHHHHHCCCCCCCEEEECCCEEEEEECCCCCCCCEEEEEEEEE
FPGTYSIQRGESLKDVLARAGGLTSDAAPRSAVFLRKSVKDKEQLELSKLADELRREIAA
CCCCEEECCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
KALTKDTPTIGYNDAQLMLNQLENVKTVGRLVVDVNAIELGIDSANLMLEDEDALYIPAT
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCCCEEEECCCEEEEECC
NQTVSVMGQVQHPSTHRYKQGLTFDQYLALSGGARKRADESRSYILRADGSVEMPNTSFW
CCEEEEEEECCCCCCHHHHCCCCHHHHEEECCCCCCCCCCCCCEEEECCCCEECCCCEEE
FSGGSAIEPGDTIVVPLDTEYKDNLTLWSQVTGIIYNTAVAVSVISGL
ECCCCCCCCCCEEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLRQVKKFIILGISAAILMGAQANAITPSPQMIEQFKALPKSEQERLARQYGVDPSMITG
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEC
AGATATVVENPTVVTPRATKNNVVDQSESDQLNQATKSESTVEAIEDKKENQLKRFGYDL
CCCEEEEECCCEEECCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCE
FAGSPSTFAPVSDVPVPAEYMIGPGDSLNVQLFGKENNQYTLTVGRDGAIQFPNLGPISL
ECCCCCCCCCCCCCCCCHHEEECCCCCEEEEEEECCCCEEEEEECCCCCEECCCCCCHHE
VGLSFAEVRELLQQKISQSMIGIESSITMGELRSIRIFVAGDAFQPGSYTVSSLSTITQA
ECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCEEHHHHHHHHHH
LFISGGVNQIGSLRNIQIKRAGKTVGHLDLYDLLLRGDASGDIRLQSGDVVFIPSSGGSV
HHHCCCHHHHCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCEEEECCCEEEEECCCCCE
SVMGEVRRPAIYELKNNETMADVIRMASGLNPGAYPKASTVERFSNESVKTVISVDLTEN
EEEECCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCEEEEEEEEECCC
VGLNTLVKNGDLLNVRSASSRIDNAITVAGAVVRPGKYQWTKGLTVADLLPSIWGDLTIS
CCCEEEECCCCEEEECCHHHHHCCCEEEEEEEECCCCEECCCCCCHHHHHHHHHCCEEEE
ADLDYALLVREINQRGDIQVERIALGRAIGEPKSHYNPQLNPRDSIIVFDYADREALLKP
CCCCHHHHHHHHCCCCCEEEEEEEHHHHCCCCHHHCCCCCCCCCCEEEEEECCHHHHHHH
IIQKLREQSRFGDAAKLVNINGNVRFPGQYPITINADIKELLIAAGGLEEGAYTLAAELT
HHHHHHHHHCCCCCEEEEECCCCEECCCCCCEEECCCHHHHHHHCCCCCCCHHHHHHHHH
RQNVSEQNGVSIEHVQLSLDQVMQNDPAANIKLQSRDILTVRTLPDWQENRWVTIKGEVK
HHCCCCCCCCEEEEEEEEHHHHHCCCCCCCEEEECCCEEEEEECCCCCCCCEEEEEEEEE
FPGTYSIQRGESLKDVLARAGGLTSDAAPRSAVFLRKSVKDKEQLELSKLADELRREIAA
CCCCEEECCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
KALTKDTPTIGYNDAQLMLNQLENVKTVGRLVVDVNAIELGIDSANLMLEDEDALYIPAT
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCCCEEEECCCEEEEECC
NQTVSVMGQVQHPSTHRYKQGLTFDQYLALSGGARKRADESRSYILRADGSVEMPNTSFW
CCEEEEEEECCCCCCHHHHCCCCHHHHEEECCCCCCCCCCCCCEEEECCCCEECCCCEEE
FSGGSAIEPGDTIVVPLDTEYKDNLTLWSQVTGIIYNTAVAVSVISGL
ECCCCCCCCCCEEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8021185 [H]