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The map label for this gene is rfaH [H]

Identifier: 160876145

GI number: 160876145

Start: 3606667

End: 3607173

Strand: Reverse

Name: rfaH [H]

Synonym: Sbal195_3036

Alternate gene names: 160876145

Gene position: 3607173-3606667 (Counterclockwise)

Preceding gene: 160876147

Following gene: 160876144

Centisome position: 67.46

GC content: 40.43

Gene sequence:

>507_bases
ATGAAGGCATGGTACCTTTTGTATTGTAAGCCTCGTAGTGAAGCGAGAGCGCAACAGAACTTAGCACTTCAAAATTTAGA
GACCTATTTACCTATGGTCTCTGAAGAGAAATCTCAACGCGGACGGAAACAGGTCTGTCGTGTACCTTTATTCCCTAATT
ATTTATTCATCAATTTCGACCCAAGCCAAACAAGTGTTAGGCAGGTCCACTCTACTCGTGGTGTGAATCGAATCGTTAAT
TGTCAAGAAAAAATGACGCCCATTGACGACAGAATTATCCATGCCATTCGCATGAAAGAATTAACGCCTTCCCAAACGGT
ATTAGCCGAAGCATTAGAGCTAAAAACTGGGGAAAAAATTCGTTTTACAGATGGGCCATTTGTTGATCTAGAAGGTATTT
TTCAAGAAAAATGCCCCAATAAGCGTTGTCATGTTCTATTCAACATTATGGGACAAATAAAGACAGTTACAGTGCCAGAG
CAAAGCGTTGAAAGAGTTTGCGGTTAA

Upstream 100 bases:

>100_bases
CTGGAATAGGCGAAAAACTACTTCCATCGACTTAGGCATCTTTGCTATGATTGCCGCCCGTGAATGGACGTCACTTAAAA
TAGGGTAGTGAGATTAGCGT

Downstream 100 bases:

>100_bases
GTAAGTGATGCAAGCGACATTGTAAGAATTACGATGATGTGTTTGTAGGATATTAGCTATTTTTGCGGTTCATGTTTTTT
GCTTGCAATTTATGTAGGTC

Product: transcriptional acivator RfaH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 168

Protein sequence:

>168_residues
MKAWYLLYCKPRSEARAQQNLALQNLETYLPMVSEEKSQRGRKQVCRVPLFPNYLFINFDPSQTSVRQVHSTRGVNRIVN
CQEKMTPIDDRIIHAIRMKELTPSQTVLAEALELKTGEKIRFTDGPFVDLEGIFQEKCPNKRCHVLFNIMGQIKTVTVPE
QSVERVCG

Sequences:

>Translated_168_residues
MKAWYLLYCKPRSEARAQQNLALQNLETYLPMVSEEKSQRGRKQVCRVPLFPNYLFINFDPSQTSVRQVHSTRGVNRIVN
CQEKMTPIDDRIIHAIRMKELTPSQTVLAEALELKTGEKIRFTDGPFVDLEGIFQEKCPNKRCHVLFNIMGQIKTVTVPE
QSVERVCG
>Mature_168_residues
MKAWYLLYCKPRSEARAQQNLALQNLETYLPMVSEEKSQRGRKQVCRVPLFPNYLFINFDPSQTSVRQVHSTRGVNRIVN
CQEKMTPIDDRIIHAIRMKELTPSQTVLAEALELKTGEKIRFTDGPFVDLEGIFQEKCPNKRCHVLFNIMGQIKTVTVPE
QSVERVCG

Specific function: Transcriptional activator of hemolysin synthesis and secretion, also required for expression of sex factor and lipopolysaccharide biosynthesis genes. Transcriptional activator of rfaD/htrM and htrL [H]

COG id: COG0250

COG function: function code K; Transcription antiterminator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790276, Length=152, Percent_Identity=32.8947368421053, Blast_Score=93, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005824
- InterPro:   IPR010215
- InterPro:   IPR006645
- InterPro:   IPR014722 [H]

Pfam domain/function: PF02357 NusG [H]

EC number: NA

Molecular weight: Translated: 19398; Mature: 19398

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAWYLLYCKPRSEARAQQNLALQNLETYLPMVSEEKSQRGRKQVCRVPLFPNYLFINFD
CCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEC
PSQTSVRQVHSTRGVNRIVNCQEKMTPIDDRIIHAIRMKELTPSQTVLAEALELKTGEKI
CCHHHHHHHHHHCCHHHHHCCHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEE
RFTDGPFVDLEGIFQEKCPNKRCHVLFNIMGQIKTVTVPEQSVERVCG
EECCCCEECHHHHHHHCCCCCHHHHHHHHHCCEEEEECCHHHHHHHCC
>Mature Secondary Structure
MKAWYLLYCKPRSEARAQQNLALQNLETYLPMVSEEKSQRGRKQVCRVPLFPNYLFINFD
CCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEC
PSQTSVRQVHSTRGVNRIVNCQEKMTPIDDRIIHAIRMKELTPSQTVLAEALELKTGEKI
CCHHHHHHHHHHCCHHHHHCCHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEE
RFTDGPFVDLEGIFQEKCPNKRCHVLFNIMGQIKTVTVPEQSVERVCG
EECCCCEECHHHHHHHCCCCCHHHHHHHHHCCEEEEECCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]