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The map label for this gene is rnfB [H]

Identifier: 160875224

GI number: 160875224

Start: 2521407

End: 2522021

Strand: Reverse

Name: rnfB [H]

Synonym: Sbal195_2111

Alternate gene names: 160875224

Gene position: 2522021-2521407 (Counterclockwise)

Preceding gene: 160875225

Following gene: 160875223

Centisome position: 47.16

GC content: 47.64

Gene sequence:

>615_bases
ATGTCCGGAATTTTAATTGCAGTCATATTGTTGACCCTATTGGCATTAGTCTTTGGGGTATTGCTCGGTTTTGCCGCCCT
TAAATTCAAGGTCGAAGGCAATCCGATTGTCGATGAGCTAGAAGCAATTCTGCCACAAACCCAATGCGGTCAATGCGGTT
ACCCAGGTTGTCGCCCCTATGCTGAAGCCATTGCCAATGGCGATAAAGTCAATAAATGCCCCCCTGGCGGCACGGCCACC
ATGGAAAAGCTGGCGACCCTAATGGGCGTCGAGCCAGAGCCACTGAATGCCGAAGCACAATCTCAAGTAAAAAAAGTCGC
CTACATTCGCGAAGATGAATGTATTGGCTGCACTAAATGTATTCAAGCCTGCCCTGTGGATGCGATTATCGGTGCAGGAA
AGCTCATGCATACCGTGCTTACAACCGACTGCACGGGCTGCGATCTCTGCGTTGAGCCTTGTCCTGTCGATTGTATTGAT
ATGATCCCAGTCACCCCAAATCTTAAAAATTGGAACTGGCGCTTAAATGCTATCCCAGTGACGCTCATCCAAGAAAACAG
TATTCAAGAAACCAATATTCAAGAGACAAAGTCTGAAGAGGAAAAGCGGTGTTAA

Upstream 100 bases:

>100_bases
GCCGATGTCCCCTTACCTTTCAAAGGCGGGGCGATTGCGATGATCACCGCAGGTCTTATGTCCCTCGCCTTTATGGGATT
CACAGGATTGGTTAAGTAAG

Downstream 100 bases:

>100_bases
CTTTATTAGATCAATTAGATAAAGGAACCCTTTGGCGCTCACCCGGTGGAATACATCCTCCTGAAGTCAAATTCCTCTCC
AACGCGACGCCTATTGGCAA

Product: electron transport complex protein RnfB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 203

Protein sequence:

>204_residues
MSGILIAVILLTLLALVFGVLLGFAALKFKVEGNPIVDELEAILPQTQCGQCGYPGCRPYAEAIANGDKVNKCPPGGTAT
MEKLATLMGVEPEPLNAEAQSQVKKVAYIREDECIGCTKCIQACPVDAIIGAGKLMHTVLTTDCTGCDLCVEPCPVDCID
MIPVTPNLKNWNWRLNAIPVTLIQENSIQETNIQETKSEEEKRC

Sequences:

>Translated_204_residues
MSGILIAVILLTLLALVFGVLLGFAALKFKVEGNPIVDELEAILPQTQCGQCGYPGCRPYAEAIANGDKVNKCPPGGTAT
MEKLATLMGVEPEPLNAEAQSQVKKVAYIREDECIGCTKCIQACPVDAIIGAGKLMHTVLTTDCTGCDLCVEPCPVDCID
MIPVTPNLKNWNWRLNAIPVTLIQENSIQETNIQETKSEEEKRC
>Mature_203_residues
SGILIAVILLTLLALVFGVLLGFAALKFKVEGNPIVDELEAILPQTQCGQCGYPGCRPYAEAIANGDKVNKCPPGGTATM
EKLATLMGVEPEPLNAEAQSQVKKVAYIREDECIGCTKCIQACPVDAIIGAGKLMHTVLTTDCTGCDLCVEPCPVDCIDM
IPVTPNLKNWNWRLNAIPVTLIQENSIQETNIQETKSEEEKRC

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=186, Percent_Identity=58.0645161290323, Blast_Score=231, Evalue=3e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 21993; Mature: 21862

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
9.3 %Cys+Met (Translated Protein)
6.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
8.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGILIAVILLTLLALVFGVLLGFAALKFKVEGNPIVDELEAILPQTQCGQCGYPGCRPY
CCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHCCCCCCCCCCCCCCHHH
AEAIANGDKVNKCPPGGTATMEKLATLMGVEPEPLNAEAQSQVKKVAYIREDECIGCTKC
HHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHH
IQACPVDAIIGAGKLMHTVLTTDCTGCDLCVEPCPVDCIDMIPVTPNLKNWNWRLNAIPV
HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEEEEEEE
TLIQENSIQETNIQETKSEEEKRC
EEEECCCCCCCCCHHHHHHHHCCC
>Mature Secondary Structure 
SGILIAVILLTLLALVFGVLLGFAALKFKVEGNPIVDELEAILPQTQCGQCGYPGCRPY
CHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHCCCCCCCCCCCCCCHHH
AEAIANGDKVNKCPPGGTATMEKLATLMGVEPEPLNAEAQSQVKKVAYIREDECIGCTKC
HHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHH
IQACPVDAIIGAGKLMHTVLTTDCTGCDLCVEPCPVDCIDMIPVTPNLKNWNWRLNAIPV
HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEEEEEEE
TLIQENSIQETNIQETKSEEEKRC
EEEECCCCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]