Click here to switch to the map view.

The map label for this gene is ytfM [H]

Identifier: 160875051

GI number: 160875051

Start: 2312288

End: 2314141

Strand: Reverse

Name: ytfM [H]

Synonym: Sbal195_1936

Alternate gene names: 160875051

Gene position: 2314141-2312288 (Counterclockwise)

Preceding gene: 160875062

Following gene: 160875050

Centisome position: 43.28

GC content: 46.87

Gene sequence:

>1854_bases
GTGCAGCCATTTTTGCAAATCACCTCACATTACTTTCGTTTTTGCTTATTTCTGAGTCTGATTTCAGTCACATCCGTCGC
TGCGGCGGCAGATGAATTTATTAAATTATCTGTCACAGGCGTGAATGAAGCTCTGCAACGTAACATAGTTGCGCACTTAG
GCACCTTACCCGAATCCGAGGTGCAGCGCCGTGCCTTTCTGTTTAATGTCGATGACAATGTCAGCACAGCCTTAGAATCC
ATGGGTTACTATCATGGCGAAGTGGAAGAAAAACTGACGGAACATGACAAGGGACCGTGGGAACTAAAACTGGTGATCAC
TGCCGGCGAGCCAACCATAGTGCAGTGGGTCGATATTAACTTCAGTGGCGAAATGCTCGATGATCGCGCTTTCGATCAAT
GGCTGGCAAAGGTCAACCTTAAGCCTGGCGATGTGCTCAACCACGGTGTGTATAGCGACGTAAAATCGCAACTGGTCACC
TTAGCTCTGGCCCGAGGTTACTTCGATGGCGAATTTACGGAATCACAGATTAAAGTTAACCGCGACATCAATACCGCGCA
GGTAAGTTTGCATTTTGACTCTGGCAAACGTTATAAATTTGGCCAAGTCAGCTTCGAAGGCCATACTTTAGAACCTGAAA
TTTTAGAAAATCTTATCCCCTTTAAAGAAGGCGCCTCCTACTCGACTCGCCGTGTGGGCGCGCTGAATCGCCAGTTATTA
GACACGGGCTATTTCGCCAATATCAAAGTGATCCCGCAAATCGACGGTGTCGAAGAGAGTCATATTCCTGTGCTGGTGGA
ATTAACTCCTAAGGCAAGCCACGCCATTGAGCTCGGTTTTGGTGGTGATATTGGTAAGACGGATCAAGCTTTCGACCCAA
GAGTGCGCGTGACCTGGCGGACGCCACAAATCAATAAATACGGTCACTCACAGGAAACCAGCCTTGAATGGTCACCGGAT
AGACCAAAGTTATTAACCACTTATACTATCCCCTTGACGCATCCCTTAGATGATCAATTAAAAATCCGCGTCGGTTTGCT
ACGGGACAAATACGGTGTGACCCAAGTGTATGACGCCGAGAATCGCGATTTTAGTAATACAGGTCAGCTTGAATCGACCA
AATATCTTCTTGGGCTATTACGCCAACAAAGACTCGAAAACCAATGGCTAATGAGTTATTCACTTGAAGCTATTCGCGAA
GAATATACCCAGTCTGACGTCGATTATATGCCGTCGTTTTATTTGGCTGGGATTAACTTTTCGCGAACAACGCGCGGTGA
TAATTCTCTCGATCCTAAGTCCGGTTTTAGGCAGATTTACAGCCTAGACTATGCCGATCCCTATTTGGGCTCAGAAACCC
GCTTAGCGCGCCTCCAAGCTAAATTTAAATGGATTGATACCTTCTTCGACAACCACAGGATCGTTGCACGTATCGATTTA
GCCGCCAACTTAGCCAACGAAAATGATCTAGCCTCTATTCCGCCTTCACTGCGCTATTTTGCCGGTGGCGATCAGAGTGT
GCGGGGTTATGGTTATCAAGAATTGGGCCCCTATTTAGATTATGTCGCCGATGATGGCAAGACCAATCGCGAGGTCATAG
GTGGCCGCTATTTAATGGTCGGCAGTTTAGAATATCAATATTATGTGACCCCCACTTGGCGGGTCGGTACCTTTATCGAT
GCGGGTAACGCCTTCGATAATAATCAATTTGAACCTGTTGTCTCAGTCGGTGGCGGTATCCATTGGATTTCCCCCATTGG
CCCAATCAAACTGGATTTAGGGGTTGGATTGAAAGAAACCGATACCATTGAAAGATCATGGCGAATTCACCTGACCATGG
GGACAGATCTATGA

Upstream 100 bases:

>100_bases
GTAGCGTCCTTTGTACCCATTTCATCGTGTAATTTCAATCATCTCCTTGCCTGTTGGTTTTATTCTGGCGACAATGATGC
CACATCACAGGGACTATAAA

Downstream 100 bases:

>100_bases
GCCTACCCCCAGAGCATAATAAGCCAACCGAACAAGACGCCGTAGGCAGTCCCATCACGGAAGTCACTGAAGCCATTGCG
ACCTCTGTCACCCAATCGGT

Product: surface antigen (D15)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 617; Mature: 617

Protein sequence:

>617_residues
MQPFLQITSHYFRFCLFLSLISVTSVAAAADEFIKLSVTGVNEALQRNIVAHLGTLPESEVQRRAFLFNVDDNVSTALES
MGYYHGEVEEKLTEHDKGPWELKLVITAGEPTIVQWVDINFSGEMLDDRAFDQWLAKVNLKPGDVLNHGVYSDVKSQLVT
LALARGYFDGEFTESQIKVNRDINTAQVSLHFDSGKRYKFGQVSFEGHTLEPEILENLIPFKEGASYSTRRVGALNRQLL
DTGYFANIKVIPQIDGVEESHIPVLVELTPKASHAIELGFGGDIGKTDQAFDPRVRVTWRTPQINKYGHSQETSLEWSPD
RPKLLTTYTIPLTHPLDDQLKIRVGLLRDKYGVTQVYDAENRDFSNTGQLESTKYLLGLLRQQRLENQWLMSYSLEAIRE
EYTQSDVDYMPSFYLAGINFSRTTRGDNSLDPKSGFRQIYSLDYADPYLGSETRLARLQAKFKWIDTFFDNHRIVARIDL
AANLANENDLASIPPSLRYFAGGDQSVRGYGYQELGPYLDYVADDGKTNREVIGGRYLMVGSLEYQYYVTPTWRVGTFID
AGNAFDNNQFEPVVSVGGGIHWISPIGPIKLDLGVGLKETDTIERSWRIHLTMGTDL

Sequences:

>Translated_617_residues
MQPFLQITSHYFRFCLFLSLISVTSVAAAADEFIKLSVTGVNEALQRNIVAHLGTLPESEVQRRAFLFNVDDNVSTALES
MGYYHGEVEEKLTEHDKGPWELKLVITAGEPTIVQWVDINFSGEMLDDRAFDQWLAKVNLKPGDVLNHGVYSDVKSQLVT
LALARGYFDGEFTESQIKVNRDINTAQVSLHFDSGKRYKFGQVSFEGHTLEPEILENLIPFKEGASYSTRRVGALNRQLL
DTGYFANIKVIPQIDGVEESHIPVLVELTPKASHAIELGFGGDIGKTDQAFDPRVRVTWRTPQINKYGHSQETSLEWSPD
RPKLLTTYTIPLTHPLDDQLKIRVGLLRDKYGVTQVYDAENRDFSNTGQLESTKYLLGLLRQQRLENQWLMSYSLEAIRE
EYTQSDVDYMPSFYLAGINFSRTTRGDNSLDPKSGFRQIYSLDYADPYLGSETRLARLQAKFKWIDTFFDNHRIVARIDL
AANLANENDLASIPPSLRYFAGGDQSVRGYGYQELGPYLDYVADDGKTNREVIGGRYLMVGSLEYQYYVTPTWRVGTFID
AGNAFDNNQFEPVVSVGGGIHWISPIGPIKLDLGVGLKETDTIERSWRIHLTMGTDL
>Mature_617_residues
MQPFLQITSHYFRFCLFLSLISVTSVAAAADEFIKLSVTGVNEALQRNIVAHLGTLPESEVQRRAFLFNVDDNVSTALES
MGYYHGEVEEKLTEHDKGPWELKLVITAGEPTIVQWVDINFSGEMLDDRAFDQWLAKVNLKPGDVLNHGVYSDVKSQLVT
LALARGYFDGEFTESQIKVNRDINTAQVSLHFDSGKRYKFGQVSFEGHTLEPEILENLIPFKEGASYSTRRVGALNRQLL
DTGYFANIKVIPQIDGVEESHIPVLVELTPKASHAIELGFGGDIGKTDQAFDPRVRVTWRTPQINKYGHSQETSLEWSPD
RPKLLTTYTIPLTHPLDDQLKIRVGLLRDKYGVTQVYDAENRDFSNTGQLESTKYLLGLLRQQRLENQWLMSYSLEAIRE
EYTQSDVDYMPSFYLAGINFSRTTRGDNSLDPKSGFRQIYSLDYADPYLGSETRLARLQAKFKWIDTFFDNHRIVARIDL
AANLANENDLASIPPSLRYFAGGDQSVRGYGYQELGPYLDYVADDGKTNREVIGGRYLMVGSLEYQYYVTPTWRVGTFID
AGNAFDNNQFEPVVSVGGGIHWISPIGPIKLDLGVGLKETDTIERSWRIHLTMGTDL

Specific function: Unknown

COG id: COG0729

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0698 [H]

Homologues:

Organism=Escherichia coli, GI1790666, Length=617, Percent_Identity=33.54943273906, Blast_Score=319, Evalue=3e-88,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 69746; Mature: 69746

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPFLQITSHYFRFCLFLSLISVTSVAAAADEFIKLSVTGVNEALQRNIVAHLGTLPESE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHCCCCHHH
VQRRAFLFNVDDNVSTALESMGYYHGEVEEKLTEHDKGPWELKLVITAGEPTIVQWVDIN
HCCEEEEEECCCCHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCEEEEEEEEC
FSGEMLDDRAFDQWLAKVNLKPGDVLNHGVYSDVKSQLVTLALARGYFDGEFTESQIKVN
CCCCCCCHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
RDINTAQVSLHFDSGKRYKFGQVSFEGHTLEPEILENLIPFKEGASYSTRRVGALNRQLL
CCCCEEEEEEEECCCCEEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
DTGYFANIKVIPQIDGVEESHIPVLVELTPKASHAIELGFGGDIGKTDQAFDPRVRVTWR
CCCCEEEEEEEECCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEEEE
TPQINKYGHSQETSLEWSPDRPKLLTTYTIPLTHPLDDQLKIRVGLLRDKYGVTQVYDAE
CCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEECC
NRDFSNTGQLESTKYLLGLLRQQRLENQWLMSYSLEAIREEYTQSDVDYMPSFYLAGINF
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEEECCCC
SRTTRGDNSLDPKSGFRQIYSLDYADPYLGSETRLARLQAKFKWIDTFFDNHRIVARIDL
CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEE
AANLANENDLASIPPSLRYFAGGDQSVRGYGYQELGPYLDYVADDGKTNREVIGGRYLMV
EHCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCHHHHHCCCCCCCCEEECCEEEEE
GSLEYQYYVTPTWRVGTFIDAGNAFDNNQFEPVVSVGGGIHWISPIGPIKLDLGVGLKET
EEEEEEEEEECCEEEEEEEECCCCCCCCCCCEEEECCCCEEEECCCCCEEEEECCCCCCC
DTIERSWRIHLTMGTDL
CCCCCEEEEEEEECCCC
>Mature Secondary Structure
MQPFLQITSHYFRFCLFLSLISVTSVAAAADEFIKLSVTGVNEALQRNIVAHLGTLPESE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHCCCCHHH
VQRRAFLFNVDDNVSTALESMGYYHGEVEEKLTEHDKGPWELKLVITAGEPTIVQWVDIN
HCCEEEEEECCCCHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCEEEEEEEEC
FSGEMLDDRAFDQWLAKVNLKPGDVLNHGVYSDVKSQLVTLALARGYFDGEFTESQIKVN
CCCCCCCHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
RDINTAQVSLHFDSGKRYKFGQVSFEGHTLEPEILENLIPFKEGASYSTRRVGALNRQLL
CCCCEEEEEEEECCCCEEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
DTGYFANIKVIPQIDGVEESHIPVLVELTPKASHAIELGFGGDIGKTDQAFDPRVRVTWR
CCCCEEEEEEEECCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEEEE
TPQINKYGHSQETSLEWSPDRPKLLTTYTIPLTHPLDDQLKIRVGLLRDKYGVTQVYDAE
CCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEECC
NRDFSNTGQLESTKYLLGLLRQQRLENQWLMSYSLEAIREEYTQSDVDYMPSFYLAGINF
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEEECCCC
SRTTRGDNSLDPKSGFRQIYSLDYADPYLGSETRLARLQAKFKWIDTFFDNHRIVARIDL
CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEE
AANLANENDLASIPPSLRYFAGGDQSVRGYGYQELGPYLDYVADDGKTNREVIGGRYLMV
EHCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCHHHHHCCCCCCCCEEECCEEEEE
GSLEYQYYVTPTWRVGTFIDAGNAFDNNQFEPVVSVGGGIHWISPIGPIKLDLGVGLKET
EEEEEEEEEECCEEEEEEEECCCCCCCCCCCEEEECCCCEEEECCCCCEEEEECCCCCCC
DTIERSWRIHLTMGTDL
CCCCCEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]