Click here to switch to the map view.

The map label for this gene is hydD [H]

Identifier: 160875034

GI number: 160875034

Start: 2290450

End: 2291007

Strand: Reverse

Name: hydD [H]

Synonym: Sbal195_1919

Alternate gene names: 160875034

Gene position: 2291007-2290450 (Counterclockwise)

Preceding gene: 160875035

Following gene: 160875033

Centisome position: 42.84

GC content: 49.28

Gene sequence:

>558_bases
ATGAAGATATTGCTACTCGGTATTGGCAATGTCCTGTACGCCGATGAAGGCATCGGCGTACATTTTGTCAATTATATAGC
TGATAACTATCAGTTTACCCATGAGTCTCACCAGCTGAAGCTGCTCGATGGCGGCACCTTGGCTCAGGGACTCATTCCCA
TTATTTGCCAATATGATTATTTAATCGTGGTCGATACTGTCAATGCCAATGGCGTAGAAGCGGGCGAGGTCTACTTCTTC
GATTTTGATAAGGCTCCGAAGGAAATCGACTGGCAAGGCAGCGCCCATGAAGTCGAAATGCTGCAAACCCTCAATATGAT
GGAGATGGTTGGCGACAGACCTAAGACCTTTGTGCTGGGCGTCACCCCAACCGTGCTCGAACCTATGGTGCTGGGTTTGA
CCCCTAAAGTCGCCGCCGCAGTGCCGTTAATGGAATCAAGCTTGTTATCCCACTTAGCCTCCCTTGGGTTCACTGCGACG
CGTATTGCCGATCACAGTATCGACTCGCTGATCCCTGACTCTTATAAACGCGGCGTTACTACTGGTGAAAGTATATAG

Upstream 100 bases:

>100_bases
ATGGCGGTTTGGTCAGGGATACGCTTCAAACATAACTCAGTTGACTCGATTGTCTCTGGCTATGACTACCCAAAGCCAGA
CTCACACCACTAGGAGTCCA

Downstream 100 bases:

>100_bases
AAAATGAAAAACATCAGATTTGATTTTACCTGTTCACGTCAGGTGCCTTTGTACGCGCATTTATGTAATCAATACCTAAA
TTACGATGCGCTGAACATCA

Product: hydrogenase expression/formation protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MKILLLGIGNVLYADEGIGVHFVNYIADNYQFTHESHQLKLLDGGTLAQGLIPIICQYDYLIVVDTVNANGVEAGEVYFF
DFDKAPKEIDWQGSAHEVEMLQTLNMMEMVGDRPKTFVLGVTPTVLEPMVLGLTPKVAAAVPLMESSLLSHLASLGFTAT
RIADHSIDSLIPDSYKRGVTTGESI

Sequences:

>Translated_185_residues
MKILLLGIGNVLYADEGIGVHFVNYIADNYQFTHESHQLKLLDGGTLAQGLIPIICQYDYLIVVDTVNANGVEAGEVYFF
DFDKAPKEIDWQGSAHEVEMLQTLNMMEMVGDRPKTFVLGVTPTVLEPMVLGLTPKVAAAVPLMESSLLSHLASLGFTAT
RIADHSIDSLIPDSYKRGVTTGESI
>Mature_185_residues
MKILLLGIGNVLYADEGIGVHFVNYIADNYQFTHESHQLKLLDGGTLAQGLIPIICQYDYLIVVDTVNANGVEAGEVYFF
DFDKAPKEIDWQGSAHEVEMLQTLNMMEMVGDRPKTFVLGVTPTVLEPMVLGLTPKVAAAVPLMESSLLSHLASLGFTAT
RIADHSIDSLIPDSYKRGVTTGESI

Specific function: Protease Involved In The C-Terminal Processing Of Hybc, The Large Subunit Of Hydrogenase 2. Specifically Cleaves Off A 15 Amino Acid Peptide From The C Terminus Of The Precursor Of Hybc. [C]

COG id: COG0680

COG function: function code C; Ni,Fe-hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase A31 family [H]

Homologues:

Organism=Escherichia coli, GI1789367, Length=156, Percent_Identity=32.6923076923077, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004419
- InterPro:   IPR000671 [H]

Pfam domain/function: PF01750 HycI [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 20186; Mature: 20186

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILLLGIGNVLYADEGIGVHFVNYIADNYQFTHESHQLKLLDGGTLAQGLIPIICQYDY
CEEEEEECCCEEEECCCCCEEEEEEHHCCEEEECCCCEEEEEECCCHHHHHHHHHCCCCE
LIVVDTVNANGVEAGEVYFFDFDKAPKEIDWQGSAHEVEMLQTLNMMEMVGDRPKTFVLG
EEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEE
VTPTVLEPMVLGLTPKVAAAVPLMESSLLSHLASLGFTATRIADHSIDSLIPDSYKRGVT
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHCCCC
TGESI
CCCCC
>Mature Secondary Structure
MKILLLGIGNVLYADEGIGVHFVNYIADNYQFTHESHQLKLLDGGTLAQGLIPIICQYDY
CEEEEEECCCEEEECCCCCEEEEEEHHCCEEEECCCCEEEEEECCCHHHHHHHHHCCCCE
LIVVDTVNANGVEAGEVYFFDFDKAPKEIDWQGSAHEVEMLQTLNMMEMVGDRPKTFVLG
EEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEE
VTPTVLEPMVLGLTPKVAAAVPLMESSLLSHLASLGFTATRIADHSIDSLIPDSYKRGVT
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHCCCC
TGESI
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1587288; 9639603; 14500908 [H]