Click here to switch to the map view.

The map label for this gene is cdd

Identifier: 160874833

GI number: 160874833

Start: 2064203

End: 2065093

Strand: Reverse

Name: cdd

Synonym: Sbal195_1716

Alternate gene names: 160874833

Gene position: 2065093-2064203 (Counterclockwise)

Preceding gene: 160874834

Following gene: 160874829

Centisome position: 38.62

GC content: 47.7

Gene sequence:

>891_bases
ATGCAAGATAGATTCATTCGTAGCATAACCCAACTGCCAACGCCGTTAGCCGATGCTCTCATTCCGATGTTGCACCAGAA
TTTTGCTGGGCACTTAGATGCGCAGCAACTTGCCACGCTCACAAGTGCAAGCAAGATGACCGAAGCAGAAGTGTTACTGG
CACTGCTGCCGATAGCCGCTGCACTGGCGAAACCGCCTATCAGTGAGTTTTATGTCGGTGCGATTGCCAAAGGAAAAAGT
GGCGATATCTACATGGGTGCCAACTTAGAATTACCCGGTGAAGCGCTGTTTCATTCTGTCCATGCAGAACAAAGCGCTAT
CAGCCATGCATGGCTCAGCGGTGAAAGCCAAATTGTTGATATCATAGTCAATGCCAGCCCTTGCGGCCATTGCCGTCAAT
TTATGAATGAGCTGGTTGAAGGAAGTAAGATCAGCATTCATCTACCCGCACAGGAAAGCCATCCACTGGCGTATTATTTA
CCCTATGCCTTTGGCCCAAAAGACTTAAATGTCACTTCGCCTTTAATGGCGAAGCAACAAACTGAATTTGCTTTAGATAG
TGCCGATCCTATGATCATCGAAGGTTTAGATCATGCCGGTTTAAGCTACGCGCCTTATACTCAGAGTTTTGCTGCCGTGG
TTTTAGAAACTCGCGATGGCGCAACCTATTGTGGTCGCTATGCAGAGAACGCGGCATTCAATCCTTCTATGCTGCCGATG
CAAATGGCCTTGTCAAATCTCGTTCGCCATAATCGTGAATTTAGCGATATCAGCCGTGCGGTGTTGATTGAATCATCTCA
AGGAAAAATCAGTTTAGTCGGCGCGACTATGGATGCACTCCATACCGTTGCCGCCATCGAACTTGAGCACATAGTCATCG
ATCCTGTGTAA

Upstream 100 bases:

>100_bases
CACACATTTGCAGCGTATAAACGCGAGCTAACTCGCATTTATGCTGTAACAAAATTACTAGAATGTTCTTCCATGAACTT
AACAAATAAGGAATCGGGAA

Downstream 100 bases:

>100_bases
CGCCTGCTTCAAATGCCAAGGCTGCTTCAAAATGCCAAGGGCGAAATACGTTAATGCGTATTTCGCCGTTGGATTATTCG
ATTAATACTTCAACATCAAG

Product: cytidine deaminase

Products: NA

Alternate protein names: Cytidine aminohydrolase; CDA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MQDRFIRSITQLPTPLADALIPMLHQNFAGHLDAQQLATLTSASKMTEAEVLLALLPIAAALAKPPISEFYVGAIAKGKS
GDIYMGANLELPGEALFHSVHAEQSAISHAWLSGESQIVDIIVNASPCGHCRQFMNELVEGSKISIHLPAQESHPLAYYL
PYAFGPKDLNVTSPLMAKQQTEFALDSADPMIIEGLDHAGLSYAPYTQSFAAVVLETRDGATYCGRYAENAAFNPSMLPM
QMALSNLVRHNREFSDISRAVLIESSQGKISLVGATMDALHTVAAIELEHIVIDPV

Sequences:

>Translated_296_residues
MQDRFIRSITQLPTPLADALIPMLHQNFAGHLDAQQLATLTSASKMTEAEVLLALLPIAAALAKPPISEFYVGAIAKGKS
GDIYMGANLELPGEALFHSVHAEQSAISHAWLSGESQIVDIIVNASPCGHCRQFMNELVEGSKISIHLPAQESHPLAYYL
PYAFGPKDLNVTSPLMAKQQTEFALDSADPMIIEGLDHAGLSYAPYTQSFAAVVLETRDGATYCGRYAENAAFNPSMLPM
QMALSNLVRHNREFSDISRAVLIESSQGKISLVGATMDALHTVAAIELEHIVIDPV
>Mature_296_residues
MQDRFIRSITQLPTPLADALIPMLHQNFAGHLDAQQLATLTSASKMTEAEVLLALLPIAAALAKPPISEFYVGAIAKGKS
GDIYMGANLELPGEALFHSVHAEQSAISHAWLSGESQIVDIIVNASPCGHCRQFMNELVEGSKISIHLPAQESHPLAYYL
PYAFGPKDLNVTSPLMAKQQTEFALDSADPMIIEGLDHAGLSYAPYTQSFAAVVLETRDGATYCGRYAENAAFNPSMLPM
QMALSNLVRHNREFSDISRAVLIESSQGKISLVGATMDALHTVAAIELEHIVIDPV

Specific function: This enzyme scavenge exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis

COG id: COG0295

COG function: function code F; Cytidine deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytidine and deoxycytidylate deaminase family

Homologues:

Organism=Escherichia coli, GI1788465, Length=294, Percent_Identity=44.8979591836735, Blast_Score=222, Evalue=2e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CDD_SHEB2 (B8EF35)

Other databases:

- EMBL:   CP001252
- RefSeq:   YP_002358576.1
- ProteinModelPortal:   B8EF35
- SMR:   B8EF35
- GeneID:   7089948
- GenomeReviews:   CP001252_GR
- KEGG:   sbp:Sbal223_2663
- HOGENOM:   HBG591160
- OMA:   NRSHAPY
- ProtClustDB:   PRK09027
- HAMAP:   MF_01558
- InterPro:   IPR016192
- InterPro:   IPR002125
- InterPro:   IPR013171
- InterPro:   IPR006263
- InterPro:   IPR016193
- InterPro:   IPR020797
- PIRSF:   PIRSF006334

Pfam domain/function: PF00383 dCMP_cyt_deam_1; PF08211 dCMP_cyt_deam_2; SSF53927 Cytidine_deaminase-like

EC number: =3.5.4.5

Molecular weight: Translated: 31951; Mature: 31951

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: PS00903 CYT_DCMP_DEAMINASES

Important sites: ACT_SITE 103-103

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDRFIRSITQLPTPLADALIPMLHQNFAGHLDAQQLATLTSASKMTEAEVLLALLPIAA
CCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALAKPPISEFYVGAIAKGKSGDIYMGANLELPGEALFHSVHAEQSAISHAWLSGESQIVD
HHHCCCHHHHHHHHEECCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEE
IIVNASPCGHCRQFMNELVEGSKISIHLPAQESHPLAYYLPYAFGPKDLNVTSPLMAKQQ
EEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCCCHHHHHHH
TEFALDSADPMIIEGLDHAGLSYAPYTQSFAAVVLETRDGATYCGRYAENAAFNPSMLPM
HHHHCCCCCCEEEECCCCCCCCCCCCHHCEEEEEEECCCCCHHHHHHHCCCCCCCCCCHH
QMALSNLVRHNREFSDISRAVLIESSQGKISLVGATMDALHTVAAIELEHIVIDPV
HHHHHHHHHCCCCHHHHCEEEEEECCCCEEEEEECHHHHHHHHHHEEEEEEEECCC
>Mature Secondary Structure
MQDRFIRSITQLPTPLADALIPMLHQNFAGHLDAQQLATLTSASKMTEAEVLLALLPIAA
CCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALAKPPISEFYVGAIAKGKSGDIYMGANLELPGEALFHSVHAEQSAISHAWLSGESQIVD
HHHCCCHHHHHHHHEECCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEE
IIVNASPCGHCRQFMNELVEGSKISIHLPAQESHPLAYYLPYAFGPKDLNVTSPLMAKQQ
EEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCCCHHHHHHH
TEFALDSADPMIIEGLDHAGLSYAPYTQSFAAVVLETRDGATYCGRYAENAAFNPSMLPM
HHHHCCCCCCEEEECCCCCCCCCCCCHHCEEEEEEECCCCCHHHHHHHCCCCCCCCCCHH
QMALSNLVRHNREFSDISRAVLIESSQGKISLVGATMDALHTVAAIELEHIVIDPV
HHHHHHHHHCCCCHHHHCEEEEEECCCCEEEEEECHHHHHHHHHHEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA