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The map label for this gene is cph2 [H]

Identifier: 160874530

GI number: 160874530

Start: 1692983

End: 1694656

Strand: Direct

Name: cph2 [H]

Synonym: Sbal195_1412

Alternate gene names: 160874530

Gene position: 1692983-1694656 (Clockwise)

Preceding gene: 160874528

Following gene: 160874536

Centisome position: 31.66

GC content: 44.8

Gene sequence:

>1674_bases
ATGAGCAAACTTAAACAAACCCTATTTTGGTGTTTTTTACTTTTTATATGGACATTAAGTCCCTCTGTATTAAGCGCTGA
AATTGCGTTGGACTCGCCGTATTTGTTCCATGCTCAAGCGGATCAACAGCCTCCAAAACAGTTTGATGCTGTGCCCCATT
GGATGGGCCAACTCGACGAAGCTAACTCTGTGAGTTTAACCGGCGGTGACTATTGGATGATCACGCCTGTGATGGTCAAT
CAACGTCAGTCGAATTGGGTAGTGGATGCGAGTAACTCGATTATCGAATCTGTAGATTATTGGATACTCGGCAGTGATGG
CAGTTCGCAACATGCCCATAGCGGCTACAGTGCACCCTACGAATTTTTATTTGATTATGGCCGCAAGGTCACCTTGAATA
TGGGGACGGATTATTGGCTATTGGTTAGGCTCAGTAGCCGTTATTATTCATCGCCTCCCGAGATTGCCCTGCAAAGCGTG
ACGGATCATCAGTTGATGTCTGATCGCCTCGCCATGGCCGTGCTGCTGTGCTTAGGCGGCTTATTGTTTATCGCCTTATA
TAATATTCTGATTTATATCTCTATTCTCGATAAAGCTTTTCTTTATTATGGCCTTTATGTCTTCGCGTATTTTGGTGGCT
GGGCACTGACCTTCCATTTGCCGGCGCACTTGTTTAATTTCCATTACCTTGAGTTGCACCATCTGTTTTTTATCAGTTTG
CCGATTTTTAATATCATGTTTTACAAGCACTTCTTGCAGCTGCCTAGCTACTCACCACGATTGTGGCGCCTTAGTCAGTA
TTTAATGTTTGCTTGTATTGTGGCTTTGCCGACCAGTATTTGGTTGTTGTCCTATACGGCGATTATTGCCTCTGTGCTAA
TTATGCTGTGGATTGCCCTAGCGATTACCTGCGGTAATGTATGCTTGATGAAAGGCTTTGCTCCTGCGCGTTATTTTATT
CTCGCCTTTACTTGTTTACTCTTGCCTGCGGTAATTATTTTACCCGGTAATATGGGGCTAACCCCTGATTTCATTGAACA
TGCTGAGCTGGCGACGCTGATGGGTGGCACGGCCGATGCGTTACTGCTATCTCTGGCGTTAGCCAATAAGCTCAAGTTAC
TGGCGGAGGAACGTAAGGCGCATATTGAAGAGTTAGCGATTGCATGGGAAAAGGCACGTTTAGATGGTTTGACCCGAGTA
GGTAATCGCTATGCCTTTGATGAATATATGAACTCTCAATTAGGCTTTGCCGATAAAGTGGTGCAGCCAATGGCGTTAGC
GCTATTGAATATTGATAGTCTGAAAAGTGTTAACGAAACGCTCGGCCATCAAGAGGGCGATAGGCTATTGCAAATGATAG
TGAAATTATTGCAAGCAACGGATCTCGCGCATTTAAAGCTTTATCGTATTAGTGGTGATGAGTTTGTAGTTGTGACACCT
TCTGTGGGTATCCCACTATTACTGAGTACATTGAATGGGTTAGGTGAACAATTAGCTAGCCAAGGCTTTAAGGATTGTCA
GTGTAGTTTCGGAATATCGTTAAATTCTGAGGTGGCCGATCCCCATGAATGGCTGCGTTCGGCAGACACTAACTTGTACC
AATCGCGAATGGATAAGCGTCGCCAAGAGTATGCCGATACGCGTGGGGTCGATGTGAGACTGCATTTAAGCTAA

Upstream 100 bases:

>100_bases
AAAGTTAACCTACAATTCCAACTATCGACTAAGATTGACAGCATTAGCATTTACTTCATAGCTGTATAAATGATCTATGG
CCCTTTAACTTAATAAGCCG

Downstream 100 bases:

>100_bases
CCGCTGCATTCAATCAAATGGTTTGCAATGGATGCTAGATAAAAGCTAGACAAAAATTAGGTAAAACAAAACGGCGCAGA
TAAATTCTGCGCCGTTTTTT

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 557; Mature: 556

Protein sequence:

>557_residues
MSKLKQTLFWCFLLFIWTLSPSVLSAEIALDSPYLFHAQADQQPPKQFDAVPHWMGQLDEANSVSLTGGDYWMITPVMVN
QRQSNWVVDASNSIIESVDYWILGSDGSSQHAHSGYSAPYEFLFDYGRKVTLNMGTDYWLLVRLSSRYYSSPPEIALQSV
TDHQLMSDRLAMAVLLCLGGLLFIALYNILIYISILDKAFLYYGLYVFAYFGGWALTFHLPAHLFNFHYLELHHLFFISL
PIFNIMFYKHFLQLPSYSPRLWRLSQYLMFACIVALPTSIWLLSYTAIIASVLIMLWIALAITCGNVCLMKGFAPARYFI
LAFTCLLLPAVIILPGNMGLTPDFIEHAELATLMGGTADALLLSLALANKLKLLAEERKAHIEELAIAWEKARLDGLTRV
GNRYAFDEYMNSQLGFADKVVQPMALALLNIDSLKSVNETLGHQEGDRLLQMIVKLLQATDLAHLKLYRISGDEFVVVTP
SVGIPLLLSTLNGLGEQLASQGFKDCQCSFGISLNSEVADPHEWLRSADTNLYQSRMDKRRQEYADTRGVDVRLHLS

Sequences:

>Translated_557_residues
MSKLKQTLFWCFLLFIWTLSPSVLSAEIALDSPYLFHAQADQQPPKQFDAVPHWMGQLDEANSVSLTGGDYWMITPVMVN
QRQSNWVVDASNSIIESVDYWILGSDGSSQHAHSGYSAPYEFLFDYGRKVTLNMGTDYWLLVRLSSRYYSSPPEIALQSV
TDHQLMSDRLAMAVLLCLGGLLFIALYNILIYISILDKAFLYYGLYVFAYFGGWALTFHLPAHLFNFHYLELHHLFFISL
PIFNIMFYKHFLQLPSYSPRLWRLSQYLMFACIVALPTSIWLLSYTAIIASVLIMLWIALAITCGNVCLMKGFAPARYFI
LAFTCLLLPAVIILPGNMGLTPDFIEHAELATLMGGTADALLLSLALANKLKLLAEERKAHIEELAIAWEKARLDGLTRV
GNRYAFDEYMNSQLGFADKVVQPMALALLNIDSLKSVNETLGHQEGDRLLQMIVKLLQATDLAHLKLYRISGDEFVVVTP
SVGIPLLLSTLNGLGEQLASQGFKDCQCSFGISLNSEVADPHEWLRSADTNLYQSRMDKRRQEYADTRGVDVRLHLS
>Mature_556_residues
SKLKQTLFWCFLLFIWTLSPSVLSAEIALDSPYLFHAQADQQPPKQFDAVPHWMGQLDEANSVSLTGGDYWMITPVMVNQ
RQSNWVVDASNSIIESVDYWILGSDGSSQHAHSGYSAPYEFLFDYGRKVTLNMGTDYWLLVRLSSRYYSSPPEIALQSVT
DHQLMSDRLAMAVLLCLGGLLFIALYNILIYISILDKAFLYYGLYVFAYFGGWALTFHLPAHLFNFHYLELHHLFFISLP
IFNIMFYKHFLQLPSYSPRLWRLSQYLMFACIVALPTSIWLLSYTAIIASVLIMLWIALAITCGNVCLMKGFAPARYFIL
AFTCLLLPAVIILPGNMGLTPDFIEHAELATLMGGTADALLLSLALANKLKLLAEERKAHIEELAIAWEKARLDGLTRVG
NRYAFDEYMNSQLGFADKVVQPMALALLNIDSLKSVNETLGHQEGDRLLQMIVKLLQATDLAHLKLYRISGDEFVVVTPS
VGIPLLLSTLNGLGEQLASQGFKDCQCSFGISLNSEVADPHEWLRSADTNLYQSRMDKRRQEYADTRGVDVRLHLS

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=158, Percent_Identity=31.0126582278481, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1787056, Length=168, Percent_Identity=30.3571428571429, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 62854; Mature: 62723

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKLKQTLFWCFLLFIWTLSPSVLSAEIALDSPYLFHAQADQQPPKQFDAVPHWMGQLDE
CCHHHHHHHHHHHHHHHHCCHHHHEEEEEECCCEEEECCCCCCCCHHHCCCHHHHHCCCC
ANSVSLTGGDYWMITPVMVNQRQSNWVVDASNSIIESVDYWILGSDGSSQHAHSGYSAPY
CCEEEECCCCEEEEEHHEECCCCCCEEEECCHHHHHCCCEEEECCCCCCCCCCCCCCCHH
EFLFDYGRKVTLNMGTDYWLLVRLSSRYYSSPPEIALQSVTDHQLMSDRLAMAVLLCLGG
HHHHHCCCEEEEECCCCEEEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLFIALYNILIYISILDKAFLYYGLYVFAYFGGWALTFHLPAHLFNFHYLELHHLFFISL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHH
PIFNIMFYKHFLQLPSYSPRLWRLSQYLMFACIVALPTSIWLLSYTAIIASVLIMLWIAL
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AITCGNVCLMKGFAPARYFILAFTCLLLPAVIILPGNMGLTPDFIEHAELATLMGGTADA
HHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHH
LLLSLALANKLKLLAEERKAHIEELAIAWEKARLDGLTRVGNRYAFDEYMNSQLGFADKV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHH
VQPMALALLNIDSLKSVNETLGHQEGDRLLQMIVKLLQATDLAHLKLYRISGDEFVVVTP
HHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEC
SVGIPLLLSTLNGLGEQLASQGFKDCQCSFGISLNSEVADPHEWLRSADTNLYQSRMDKR
CCCHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCHHHHHHHCCCHHHHHHHHHH
RQEYADTRGVDVRLHLS
HHHHCCCCCCEEEEEEC
>Mature Secondary Structure 
SKLKQTLFWCFLLFIWTLSPSVLSAEIALDSPYLFHAQADQQPPKQFDAVPHWMGQLDE
CHHHHHHHHHHHHHHHHCCHHHHEEEEEECCCEEEECCCCCCCCHHHCCCHHHHHCCCC
ANSVSLTGGDYWMITPVMVNQRQSNWVVDASNSIIESVDYWILGSDGSSQHAHSGYSAPY
CCEEEECCCCEEEEEHHEECCCCCCEEEECCHHHHHCCCEEEECCCCCCCCCCCCCCCHH
EFLFDYGRKVTLNMGTDYWLLVRLSSRYYSSPPEIALQSVTDHQLMSDRLAMAVLLCLGG
HHHHHCCCEEEEECCCCEEEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLFIALYNILIYISILDKAFLYYGLYVFAYFGGWALTFHLPAHLFNFHYLELHHLFFISL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHH
PIFNIMFYKHFLQLPSYSPRLWRLSQYLMFACIVALPTSIWLLSYTAIIASVLIMLWIAL
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AITCGNVCLMKGFAPARYFILAFTCLLLPAVIILPGNMGLTPDFIEHAELATLMGGTADA
HHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHH
LLLSLALANKLKLLAEERKAHIEELAIAWEKARLDGLTRVGNRYAFDEYMNSQLGFADKV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHH
VQPMALALLNIDSLKSVNETLGHQEGDRLLQMIVKLLQATDLAHLKLYRISGDEFVVVTP
HHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEC
SVGIPLLLSTLNGLGEQLASQGFKDCQCSFGISLNSEVADPHEWLRSADTNLYQSRMDKR
CCCHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCHHHHHHHCCCHHHHHHHHHH
RQEYADTRGVDVRLHLS
HHHHCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]