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The map label for this gene is rpoE [H]

Identifier: 160874391

GI number: 160874391

Start: 1511448

End: 1512026

Strand: Direct

Name: rpoE [H]

Synonym: Sbal195_1272

Alternate gene names: 160874391

Gene position: 1511448-1512026 (Clockwise)

Preceding gene: 160874389

Following gene: 160874392

Centisome position: 28.27

GC content: 44.73

Gene sequence:

>579_bases
ATGAGTGGACAATTAAGTGATCAACAATTAGTTGAGCGCGTACAACAAGGTGATAAAAACGCTTTTAACCTGTTAGTGCT
TAAATATCAAAGTAAAGTCATTAGCTTGATATCCCGTTATGTACGGAACCAAGCGGACGTTGCCGATGTCGCACAGGAAG
CGTTTATCAAAGCTTATCGAGCTTTGCCAAACTTTCGCGGTGAAAGTGCATTTTATACTTGGTTGTACCGCATCGCAGTA
AACACTGCGAAGAATTATCTCGTATCACAGGGGCGCAGAACGCCCGCTAATGATGTTGATGCAGAAGATGCCGAATATTA
TGAAGGTAGTGACGCGCTGAAGGAGTTCGCCTCCCCAGAACGGCTATTGTTATCGGAAGAAATCAAAAAAGTGATTTTCG
ATACCTTAGAAACGCTGCCAGAAGAATTACGAATGGCCATCTCGTTGCGTGAACTTGATGGAATGAGTTACGAAGATATT
GCCATAGTCATGGATTGCCCCGTAGGGACCGTAAGATCGCGTATCTTCCGAGCTCGAGAGGCAATCGATAAAAAGCTCCA
GCCGTTGCTGGAAGCCTAA

Upstream 100 bases:

>100_bases
TATTTTTTAGAACTTTTTCAAAGTACGCGAGTCTACATAAGTGAATATGATTCGAGCGACTGAGAAATCAGCATTTTAGA
TTTAGGAGAAGTCGGCTCGG

Downstream 100 bases:

>100_bases
ATTCTTATTTTAAGAAACCCTTATATTTAGACAGGTGAAAAATGGATAAATTAGGTCAAGAATGGGTATCTGCCGCAGTC
GATGGAGAGACTGATGCGCA

Product: RNA polymerase sigma factor RpoE

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MSGQLSDQQLVERVQQGDKNAFNLLVLKYQSKVISLISRYVRNQADVADVAQEAFIKAYRALPNFRGESAFYTWLYRIAV
NTAKNYLVSQGRRTPANDVDAEDAEYYEGSDALKEFASPERLLLSEEIKKVIFDTLETLPEELRMAISLRELDGMSYEDI
AIVMDCPVGTVRSRIFRAREAIDKKLQPLLEA

Sequences:

>Translated_192_residues
MSGQLSDQQLVERVQQGDKNAFNLLVLKYQSKVISLISRYVRNQADVADVAQEAFIKAYRALPNFRGESAFYTWLYRIAV
NTAKNYLVSQGRRTPANDVDAEDAEYYEGSDALKEFASPERLLLSEEIKKVIFDTLETLPEELRMAISLRELDGMSYEDI
AIVMDCPVGTVRSRIFRAREAIDKKLQPLLEA
>Mature_191_residues
SGQLSDQQLVERVQQGDKNAFNLLVLKYQSKVISLISRYVRNQADVADVAQEAFIKAYRALPNFRGESAFYTWLYRIAVN
TAKNYLVSQGRRTPANDVDAEDAEYYEGSDALKEFASPERLLLSEEIKKVIFDTLETLPEELRMAISLRELDGMSYEDIA
IVMDCPVGTVRSRIFRAREAIDKKLQPLLEA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=190, Percent_Identity=72.1052631578947, Blast_Score=287, Evalue=2e-79,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 21878; Mature: 21747

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGQLSDQQLVERVQQGDKNAFNLLVLKYQSKVISLISRYVRNQADVADVAQEAFIKAYR
CCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
ALPNFRGESAFYTWLYRIAVNTAKNYLVSQGRRTPANDVDAEDAEYYEGSDALKEFASPE
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCHHHHHHHCCHH
RLLLSEEIKKVIFDTLETLPEELRMAISLRELDGMSYEDIAIVMDCPVGTVRSRIFRARE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHH
AIDKKLQPLLEA
HHHHHHHHHHCC
>Mature Secondary Structure 
SGQLSDQQLVERVQQGDKNAFNLLVLKYQSKVISLISRYVRNQADVADVAQEAFIKAYR
CCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
ALPNFRGESAFYTWLYRIAVNTAKNYLVSQGRRTPANDVDAEDAEYYEGSDALKEFASPE
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCHHHHHHHCCHH
RLLLSEEIKKVIFDTLETLPEELRMAISLRELDGMSYEDIAIVMDCPVGTVRSRIFRARE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHH
AIDKKLQPLLEA
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]