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The map label for this gene is ybaO [C]

Identifier: 160874103

GI number: 160874103

Start: 1167849

End: 1168301

Strand: Direct

Name: ybaO [C]

Synonym: Sbal195_0983

Alternate gene names: 160874103

Gene position: 1167849-1168301 (Clockwise)

Preceding gene: 160874100

Following gene: 160874107

Centisome position: 21.84

GC content: 41.94

Gene sequence:

>453_bases
ATGTCGCTCGATAAATACGACCATGCTCTTCTCGCGTTACTCCAACTGAACTGCCAAACCCCTCTACGGGAGTTGGCGGA
AGCCGTTCATTTATCTACGGCGTCGGTTCAGCGTCGTATTCAAAAGCTGAAAGACAGCGGTTACATTCAATCTACGACCG
CCATTTTAGATCCCGATAAGCTAAATAAAGTCATCACCATTTTTGTTGAAGTTCAGGTTGAAAAAAACGATATGAATTCG
CTTCGGCAATTAAAAAAGGACTTTTCTGGTCCAGAAGTTCAGCAATGTTACTACGTAACAGGGGATGCCGACTTTATGTT
GGTGCTACTAGTTTCTCATATGCAACGATTCCAAGAGTTGTGTGATCAAATGTTCCACAATAATGCTAACGTAAAATGGT
TCAGAACAATTGTGGTGCTGGATAGAGTTAAGGTGACTTTGGATGTGTTGTAA

Upstream 100 bases:

>100_bases
ACGCAAAAAGGTAATTTAGCAGTATTTTATAGTGTTACTTTTAAAATAAGTTCTCTAAATTAATGCTATTTTCGATAAAA
TTTCTCATTTGGATGCCAAT

Downstream 100 bases:

>100_bases
TATCGCAGATCAGATATATAGCATTTTCTGTTAGTTACTAGTCGTGAAGCTAATCTTAATCCACTTGTGATAGCATTAAT
TGCTCCTGTAAGTTAGCCTA

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 149

Protein sequence:

>150_residues
MSLDKYDHALLALLQLNCQTPLRELAEAVHLSTASVQRRIQKLKDSGYIQSTTAILDPDKLNKVITIFVEVQVEKNDMNS
LRQLKKDFSGPEVQQCYYVTGDADFMLVLLVSHMQRFQELCDQMFHNNANVKWFRTIVVLDRVKVTLDVL

Sequences:

>Translated_150_residues
MSLDKYDHALLALLQLNCQTPLRELAEAVHLSTASVQRRIQKLKDSGYIQSTTAILDPDKLNKVITIFVEVQVEKNDMNS
LRQLKKDFSGPEVQQCYYVTGDADFMLVLLVSHMQRFQELCDQMFHNNANVKWFRTIVVLDRVKVTLDVL
>Mature_149_residues
SLDKYDHALLALLQLNCQTPLRELAEAVHLSTASVQRRIQKLKDSGYIQSTTAILDPDKLNKVITIFVEVQVEKNDMNSL
RQLKKDFSGPEVQQCYYVTGDADFMLVLLVSHMQRFQELCDQMFHNNANVKWFRTIVVLDRVKVTLDVL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=145, Percent_Identity=29.6551724137931, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI1787116, Length=143, Percent_Identity=30.0699300699301, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 17299; Mature: 17168

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLDKYDHALLALLQLNCQTPLRELAEAVHLSTASVQRRIQKLKDSGYIQSTTAILDPDK
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHEEECHHH
LNKVITIFVEVQVEKNDMNSLRQLKKDFSGPEVQQCYYVTGDADFMLVLLVSHMQRFQEL
HHHEEEEEEEEEECCCHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHH
CDQMFHNNANVKWFRTIVVLDRVKVTLDVL
HHHHHCCCCCHHHHHHHHHHHHHHHEEECC
>Mature Secondary Structure 
SLDKYDHALLALLQLNCQTPLRELAEAVHLSTASVQRRIQKLKDSGYIQSTTAILDPDK
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHEEECHHH
LNKVITIFVEVQVEKNDMNSLRQLKKDFSGPEVQQCYYVTGDADFMLVLLVSHMQRFQEL
HHHEEEEEEEEEECCCHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHH
CDQMFHNNANVKWFRTIVVLDRVKVTLDVL
HHHHHCCCCCHHHHHHHHHHHHHHHEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]