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The map label for this gene is irpA [H]

Identifier: 160874091

GI number: 160874091

Start: 1154460

End: 1155620

Strand: Direct

Name: irpA [H]

Synonym: Sbal195_0971

Alternate gene names: 160874091

Gene position: 1154460-1155620 (Clockwise)

Preceding gene: 160874090

Following gene: 160874092

Centisome position: 21.59

GC content: 46.08

Gene sequence:

>1161_bases
ATGACATTACGTAAAACGGCAATAGCCATCGCCCTTATGAGTACCTTAGCTGCCTGTGGTGGTTCTGGATCGGATGATTC
AACGCCCACAACACCAACTACACCGGATAATCGCTTTAGTTACGCCGCCACTGAGATGATCATTAACTTGACCGATGACG
TTATCGTGGCTGGTTATGCGGACTTAGCCGCGAAAGCGGAAGCACTTTTACTGGCGACTCAGAAGCTAACTAACTCAACA
GCACAAGCGGATTTAGACGCAGCTCAAGCTGCGTGGAAAGCGGCACGTTTACCTTGGGAACAAGGTGAATCACATATTTT
TGGCCCAGTTGACTCACTTAGCATCGATCCACATCTTGATAGCTGGCCACTCAATACGACCGATCTACAAACACAGCTAA
ATACTAACTCAGGTTTTGATGCTGAGACGATTAAGGGCTGGAACGATGATGTACAAGGTTTTCATACCATTGAATTTTTA
TTATTCGGCGATGGTGTGAATGGTAATACTAAACCTATCAGTCAGTTAACAGCAAAAGAACGTGAGTATCTCATTGCACT
GGCCGAAGTGTTCCGTGATTACACTAAGCAGCTCGACGATGCTTGGCAGATAAACCACAATCCGCAAGATGCTGCCGCTA
AACCCTACGCTGAGTTGCTGAAGAATCCCGGTGTAGCAGGCAATACTATTTACTCATCGCAATTGGCTGTAGTTGAAGAG
TTGATCAATGGCATGATTGCGATTGTCGATGAGGTCGGTAACGGTAAGATTGCTGATCCCTTTGGTGATTCCCTTGCCAC
CGCCGATACTTCAAAGGTGGAGTCGCAATATTCTTGGAACTCATTAGATGACTTTGCCAATAACATCATTGGTGTACGAA
ATGTATATCAAGGAGAGTTTACCGGTAACAGTGATCGTCAGGGCATCATTAACTTCGTGGCCGCTGCCGATGCGAACTTA
GCGACACGTGTTAGCAGTGAAATCGATGATGCCATTATCAAGATCCGCGCTATTGCCGGCAGCAATCAACAGCCTTTCCG
CCAAGCGATTAAAGATGATGCGGGAAGAGCGCGAATTCAAGTGGCTGTGGATGCCTTGACTAAGCTGAAAACCACACTTG
AGTCTGATGTCATACCATTACTTTCTCGTTGGAAATCTTAA

Upstream 100 bases:

>100_bases
CGAGCATTCCAGATACTAATTTCTTCGCCCTTGGCGTGGGTTATCAATTTTCGCTCTAGTCACATTCACTTTTGATGGAA
CAAATAGGACATTAAGCACT

Downstream 100 bases:

>100_bases
TTTCATATTCAGAGCAATGCTAAGGCAATAGAGGTTCTTGGCATTGTCATGAAATGACGCTAAACGACGGAACCCGTTTG
GTGAGTTATGTCTTAAGCAG

Product: putative lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 386; Mature: 385

Protein sequence:

>386_residues
MTLRKTAIAIALMSTLAACGGSGSDDSTPTTPTTPDNRFSYAATEMIINLTDDVIVAGYADLAAKAEALLLATQKLTNST
AQADLDAAQAAWKAARLPWEQGESHIFGPVDSLSIDPHLDSWPLNTTDLQTQLNTNSGFDAETIKGWNDDVQGFHTIEFL
LFGDGVNGNTKPISQLTAKEREYLIALAEVFRDYTKQLDDAWQINHNPQDAAAKPYAELLKNPGVAGNTIYSSQLAVVEE
LINGMIAIVDEVGNGKIADPFGDSLATADTSKVESQYSWNSLDDFANNIIGVRNVYQGEFTGNSDRQGIINFVAAADANL
ATRVSSEIDDAIIKIRAIAGSNQQPFRQAIKDDAGRARIQVAVDALTKLKTTLESDVIPLLSRWKS

Sequences:

>Translated_386_residues
MTLRKTAIAIALMSTLAACGGSGSDDSTPTTPTTPDNRFSYAATEMIINLTDDVIVAGYADLAAKAEALLLATQKLTNST
AQADLDAAQAAWKAARLPWEQGESHIFGPVDSLSIDPHLDSWPLNTTDLQTQLNTNSGFDAETIKGWNDDVQGFHTIEFL
LFGDGVNGNTKPISQLTAKEREYLIALAEVFRDYTKQLDDAWQINHNPQDAAAKPYAELLKNPGVAGNTIYSSQLAVVEE
LINGMIAIVDEVGNGKIADPFGDSLATADTSKVESQYSWNSLDDFANNIIGVRNVYQGEFTGNSDRQGIINFVAAADANL
ATRVSSEIDDAIIKIRAIAGSNQQPFRQAIKDDAGRARIQVAVDALTKLKTTLESDVIPLLSRWKS
>Mature_385_residues
TLRKTAIAIALMSTLAACGGSGSDDSTPTTPTTPDNRFSYAATEMIINLTDDVIVAGYADLAAKAEALLLATQKLTNSTA
QADLDAAQAAWKAARLPWEQGESHIFGPVDSLSIDPHLDSWPLNTTDLQTQLNTNSGFDAETIKGWNDDVQGFHTIEFLL
FGDGVNGNTKPISQLTAKEREYLIALAEVFRDYTKQLDDAWQINHNPQDAAAKPYAELLKNPGVAGNTIYSSQLAVVEEL
INGMIAIVDEVGNGKIADPFGDSLATADTSKVESQYSWNSLDDFANNIIGVRNVYQGEFTGNSDRQGIINFVAAADANLA
TRVSSEIDDAIIKIRAIAGSNQQPFRQAIKDDAGRARIQVAVDALTKLKTTLESDVIPLLSRWKS

Specific function: IrpA occurs under iron-deficient growth conditions in cyanobacterium Synechococcus and disappears in cells recovering from iron starvation. It seems to be involved in iron acquisition, uptake or storage [H]

COG id: COG3489

COG function: function code R; Predicted periplasmic lipoprotein

Gene ontology:

Cell location: Cell inner membrane [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018976 [H]

Pfam domain/function: PF09375 Peptidase_M75 [H]

EC number: NA

Molecular weight: Translated: 41610; Mature: 41478

Theoretical pI: Translated: 4.28; Mature: 4.28

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLRKTAIAIALMSTLAACGGSGSDDSTPTTPTTPDNRFSYAATEMIINLTDDVIVAGYA
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECHH
DLAAKAEALLLATQKLTNSTAQADLDAAQAAWKAARLPWEQGESHIFGPVDSLSIDPHLD
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHCCCCCEECCCCCCCCCCCCC
SWPLNTTDLQTQLNTNSGFDAETIKGWNDDVQGFHTIEFLLFGDGVNGNTKPISQLTAKE
CCCCCCHHHHEEECCCCCCCHHHHCCCCCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHH
REYLIALAEVFRDYTKQLDDAWQINHNPQDAAAKPYAELLKNPGVAGNTIYSSQLAVVEE
HHHHHHHHHHHHHHHHHHCHHEECCCCCCHHHCCHHHHHHCCCCCCCCCHHHHHHHHHHH
LINGMIAIVDEVGNGKIADPFGDSLATADTSKVESQYSWNSLDDFANNIIGVRNVYQGEF
HHHHHHHHHHHCCCCEECCCCCCCHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCC
TGNSDRQGIINFVAAADANLATRVSSEIDDAIIKIRAIAGSNQQPFRQAIKDDAGRARIQ
CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHCCCCCEEEH
VAVDALTKLKTTLESDVIPLLSRWKS
HHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TLRKTAIAIALMSTLAACGGSGSDDSTPTTPTTPDNRFSYAATEMIINLTDDVIVAGYA
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECHH
DLAAKAEALLLATQKLTNSTAQADLDAAQAAWKAARLPWEQGESHIFGPVDSLSIDPHLD
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHCCCCCEECCCCCCCCCCCCC
SWPLNTTDLQTQLNTNSGFDAETIKGWNDDVQGFHTIEFLLFGDGVNGNTKPISQLTAKE
CCCCCCHHHHEEECCCCCCCHHHHCCCCCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHH
REYLIALAEVFRDYTKQLDDAWQINHNPQDAAAKPYAELLKNPGVAGNTIYSSQLAVVEE
HHHHHHHHHHHHHHHHHHCHHEECCCCCCHHHCCHHHHHHCCCCCCCCCHHHHHHHHHHH
LINGMIAIVDEVGNGKIADPFGDSLATADTSKVESQYSWNSLDDFANNIIGVRNVYQGEF
HHHHHHHHHHHCCCCEECCCCCCCHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCC
TGNSDRQGIINFVAAADANLATRVSSEIDDAIIKIRAIAGSNQQPFRQAIKDDAGRARIQ
CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHCCCCCEEEH
VAVDALTKLKTTLESDVIPLLSRWKS
HHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3139627 [H]