Click here to switch to the map view.

The map label for this gene is yhcM [H]

Identifier: 160874052

GI number: 160874052

Start: 1101166

End: 1102485

Strand: Reverse

Name: yhcM [H]

Synonym: Sbal195_0932

Alternate gene names: 160874052

Gene position: 1102485-1101166 (Counterclockwise)

Preceding gene: 160874060

Following gene: 160874051

Centisome position: 20.62

GC content: 48.18

Gene sequence:

>1320_bases
ATGGCTCATTCAAACTCCGCTAGCTCGCAATCGATAACGCCAATGATGACGCCACTGGAAGTGTATCGCGCCAAAGTGAG
CGAAAATCTAGTTGACGATCCGGCGCAACAACAGGCGGTGTTGGCGCTCGATATGTTATTTAAACAGTTGATGCCACAAC
CCTATTCAGCACGCCACTCCCATTCACAATCCACCAAAGGCTTGTATCTGTGGGGCGATGTCGGTCGGGGTAAAACCTTT
CTGATGGATTTGTTTTTCGATTGTTTGCCAAGTGAAGGCAAGTTAAGACTGCATTTCCACCGATTTATGGCACGGATACA
CAATGCACTGCGTGAGCATTCGGGTAAACGCGATCCGTTAACGCTTATAGCAAAAAATCTAGCGAAAGAATGCAAGGTGC
TGTGTTTCGATGAGTTTTTTGTCTCGGACATTGGCGATGCCATGATACTCGCAGGGCTATTTGAGTGCCTATTCGAACAA
GGTGTGGTACTGGTCGCGACCTCTAATATTCCTATTGAGCGCTTATATGAGAACGGCTTAGCCAGACACAGATTTTTACC
TTGTATCCAACTGCTACAAACACACACGCAAATGCTGCATCTCGATGGCAACCAAGACCACAGGATTCACGCCATCAATA
CTTTATTAAACAACGAGATTGGCATTGATAGCGCTGAAATGAGTGCCTCGATTTCCCGCAATATCGGCATTACCGGAACA
CTCGATTTTGAGTATATTTTTGACAAGCTAGTGAATGGGTTAACGCCAAATACACTCAGTATGAGCGCTGTTGGCATTAG
CGATTCTGGTATTCGTGAGACTAGTATCTGCGGTAGCAGAATGAGCAATGCTAGCCTCACCATCTGCAACCGTGAAATCC
CAGTGATCCGCGCAGCTATAGGGCCCACAGACAACGCTGTTGCTTGGTTCGACTTTTATGCCCTGTGTGACGGCCCGAGA
TCCCAACTCGATTACATCGAAATCGCCAGTCGATTTAAGATCTTAATGGTGAGTGGCGTTCCTAAATTAGGCGGCGAAGT
GAAAGGCTGGATCCGTGCCCGCGGCACGGAGGACGGCACAGGAGAAAACCAAGCCGCAACGACGGGCGAGCGCAAACTCT
CCTACGCCGCCAACGACGACCCTGCGCGACGTTTTATCAGCTTAATTGATGAGTTGTACGATCAAAATGTCAGCCTTTAT
CTCAGCTGCGACGTGCCACTGAGCGAACTCTACCAAGGTGGCGCACTTAGTTTTGAATTCCGCCGTACCTACAGCCGATT
AATAGAAATGAGCCGGCATGAATTACCGAAAAATAATTGA

Upstream 100 bases:

>100_bases
TGATGCCTCAAAAGGCGAGTACTGATATCGCACTTAATCAAAGCTAAAGCACATACTGACTGCAGCGAACACCTAAAACA
ACCGCCAACGAGACCCCGAC

Downstream 100 bases:

>100_bases
TTATTTATCGCTTCGCATAAATAAGAAAAGAGATAAGAAAAGAGACAAGAAATAAGCACCAATCGTTTACGTCTCATTTA
TCCATTTATTATCGAACAAT

Product: AFG1 family ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 438

Protein sequence:

>439_residues
MAHSNSASSQSITPMMTPLEVYRAKVSENLVDDPAQQQAVLALDMLFKQLMPQPYSARHSHSQSTKGLYLWGDVGRGKTF
LMDLFFDCLPSEGKLRLHFHRFMARIHNALREHSGKRDPLTLIAKNLAKECKVLCFDEFFVSDIGDAMILAGLFECLFEQ
GVVLVATSNIPIERLYENGLARHRFLPCIQLLQTHTQMLHLDGNQDHRIHAINTLLNNEIGIDSAEMSASISRNIGITGT
LDFEYIFDKLVNGLTPNTLSMSAVGISDSGIRETSICGSRMSNASLTICNREIPVIRAAIGPTDNAVAWFDFYALCDGPR
SQLDYIEIASRFKILMVSGVPKLGGEVKGWIRARGTEDGTGENQAATTGERKLSYAANDDPARRFISLIDELYDQNVSLY
LSCDVPLSELYQGGALSFEFRRTYSRLIEMSRHELPKNN

Sequences:

>Translated_439_residues
MAHSNSASSQSITPMMTPLEVYRAKVSENLVDDPAQQQAVLALDMLFKQLMPQPYSARHSHSQSTKGLYLWGDVGRGKTF
LMDLFFDCLPSEGKLRLHFHRFMARIHNALREHSGKRDPLTLIAKNLAKECKVLCFDEFFVSDIGDAMILAGLFECLFEQ
GVVLVATSNIPIERLYENGLARHRFLPCIQLLQTHTQMLHLDGNQDHRIHAINTLLNNEIGIDSAEMSASISRNIGITGT
LDFEYIFDKLVNGLTPNTLSMSAVGISDSGIRETSICGSRMSNASLTICNREIPVIRAAIGPTDNAVAWFDFYALCDGPR
SQLDYIEIASRFKILMVSGVPKLGGEVKGWIRARGTEDGTGENQAATTGERKLSYAANDDPARRFISLIDELYDQNVSLY
LSCDVPLSELYQGGALSFEFRRTYSRLIEMSRHELPKNN
>Mature_438_residues
AHSNSASSQSITPMMTPLEVYRAKVSENLVDDPAQQQAVLALDMLFKQLMPQPYSARHSHSQSTKGLYLWGDVGRGKTFL
MDLFFDCLPSEGKLRLHFHRFMARIHNALREHSGKRDPLTLIAKNLAKECKVLCFDEFFVSDIGDAMILAGLFECLFEQG
VVLVATSNIPIERLYENGLARHRFLPCIQLLQTHTQMLHLDGNQDHRIHAINTLLNNEIGIDSAEMSASISRNIGITGTL
DFEYIFDKLVNGLTPNTLSMSAVGISDSGIRETSICGSRMSNASLTICNREIPVIRAAIGPTDNAVAWFDFYALCDGPRS
QLDYIEIASRFKILMVSGVPKLGGEVKGWIRARGTEDGTGENQAATTGERKLSYAANDDPARRFISLIDELYDQNVSLYL
SCDVPLSELYQGGALSFEFRRTYSRLIEMSRHELPKNN

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=436, Percent_Identity=30.045871559633, Blast_Score=169, Evalue=4e-42,
Organism=Escherichia coli, GI1789627, Length=447, Percent_Identity=34.2281879194631, Blast_Score=234, Evalue=8e-63,
Organism=Caenorhabditis elegans, GI17505769, Length=427, Percent_Identity=28.5714285714286, Blast_Score=162, Evalue=2e-40,
Organism=Saccharomyces cerevisiae, GI6320783, Length=366, Percent_Identity=29.7814207650273, Blast_Score=141, Evalue=2e-34,
Organism=Drosophila melanogaster, GI20129913, Length=493, Percent_Identity=28.3975659229209, Blast_Score=157, Evalue=2e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 48979; Mature: 48847

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHSNSASSQSITPMMTPLEVYRAKVSENLVDDPAQQQAVLALDMLFKQLMPQPYSARHS
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHCC
HSQSTKGLYLWGDVGRGKTFLMDLFFDCLPSEGKLRLHFHRFMARIHNALREHSGKRDPL
CCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCHH
TLIAKNLAKECKVLCFDEFFVSDIGDAMILAGLFECLFEQGVVLVATSNIPIERLYENGL
HHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHCCH
ARHRFLPCIQLLQTHTQMLHLDGNQDHRIHAINTLLNNEIGIDSAEMSASISRNIGITGT
HHHHHHHHHHHHHHHHHEEEECCCCCCEEEHHHHHHCCCCCCCHHHHHHHHHCCCCCEEE
LDFEYIFDKLVNGLTPNTLSMSAVGISDSGIRETSICGSRMSNASLTICNREIPVIRAAI
CHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHCCCCCCEEEEECCCCCEEEEEC
GPTDNAVAWFDFYALCDGPRSQLDYIEIASRFKILMVSGVPKLGGEVKGWIRARGTEDGT
CCCCCCEEHHHHHHHCCCCHHHHHHHHHHHHHEEEEEECCCCCCCCCEEHEEECCCCCCC
GENQAATTGERKLSYAANDDPARRFISLIDELYDQNVSLYLSCDVPLSELYQGGALSFEF
CCCCCCCCCCHHEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCCCCCHHH
RRTYSRLIEMSRHELPKNN
HHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
AHSNSASSQSITPMMTPLEVYRAKVSENLVDDPAQQQAVLALDMLFKQLMPQPYSARHS
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHCC
HSQSTKGLYLWGDVGRGKTFLMDLFFDCLPSEGKLRLHFHRFMARIHNALREHSGKRDPL
CCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCHH
TLIAKNLAKECKVLCFDEFFVSDIGDAMILAGLFECLFEQGVVLVATSNIPIERLYENGL
HHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHCCH
ARHRFLPCIQLLQTHTQMLHLDGNQDHRIHAINTLLNNEIGIDSAEMSASISRNIGITGT
HHHHHHHHHHHHHHHHHEEEECCCCCCEEEHHHHHHCCCCCCCHHHHHHHHHCCCCCEEE
LDFEYIFDKLVNGLTPNTLSMSAVGISDSGIRETSICGSRMSNASLTICNREIPVIRAAI
CHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHCCCCCCEEEEECCCCCEEEEEC
GPTDNAVAWFDFYALCDGPRSQLDYIEIASRFKILMVSGVPKLGGEVKGWIRARGTEDGT
CCCCCCEEHHHHHHHCCCCHHHHHHHHHHHHHEEEEEECCCCCCCCCEEHEEECCCCCCC
GENQAATTGERKLSYAANDDPARRFISLIDELYDQNVSLYLSCDVPLSELYQGGALSFEF
CCCCCCCCCCHHEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCCCCCHHH
RRTYSRLIEMSRHELPKNN
HHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]