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The map label for this gene is hlyB [H]

Identifier: 160874051

GI number: 160874051

Start: 1098846

End: 1100471

Strand: Reverse

Name: hlyB [H]

Synonym: Sbal195_0931

Alternate gene names: 160874051

Gene position: 1100471-1098846 (Counterclockwise)

Preceding gene: 160874052

Following gene: 160874049

Centisome position: 20.58

GC content: 47.66

Gene sequence:

>1626_bases
ATGTGGTTACGACAAATTAAGATTGGCTCACGACTCATTACTGCCTTTGGCTTACTCGGCCTAGTCTTGTTACTTCAGGG
GCTCATGTCGCTGCAAACTATGTCATCTATGCGCGCCTCCTCTGAAGAAATTGAAAAAAATACCCTACCGACACTCGTCA
CCCTTTCTAGCATCAATCTTAACGTGATGCGCGCTAGGGTATTTACATTTCGTCTGTTACTCGCCGATTCAGCTGCTGAG
CGTGACAAAGGGCTCGAAACCTTAAGGCAAATTCGCAAGAACATTGAAACGGATCAAAAGGCCTACGAGCCTTTAATTAG
TTTGCCTGGTGAGCAAGCCCTCTATCAGGATTTTAGTCATAATTTAGAGCTGTATTTACAGAATCAAGATCAAATGATCA
GTAAGCTGCAGGCCAATGACACGACTGAAGCTAAACGGATCATGGATGAAGTGATGACGTTACAAGCTAATAAAATAACT
AAAACGCTTATCAGCATTGGCGACTTAAATACCGAATATGCAGGCAAACAAGGCGAACTCACCGCACAAGCCTACGAAGA
AAGTAAGCTACTCAACAGCGTAGTGATAATAGCCTCCTTGATTGCCGCATTTATCGTGGCCACATTATTAACCCGTAGCA
TTGTGCAGCCAATGAAAGAAGCGGTAGACATTTCAGTGACAGTCGCAAGCGGTGATTTAACACAGAAAATTAGTGCCGAT
GGCGAAGATGAAACCAGTCAACTGATGCAAGCACTAGCAAAAATGCAGCAGAACCTGCGCGATACCTTATCCCACATCGC
AAACTCCTCTAACCAGCTCGCCTCCGCCGCCGAGGAACTCAATTCTGTGACTGAAGATGCATCCCGCGGTATACAACAAC
AAAATGATGAAATACAACAGGCTGCAACCGCAATTACCGAGATGAGTTCGGCGGTGGATGAAGTCGCCAATACCGCAGTC
CTCGCTTCAGAAGCCTCAGAAGAAACCGCCCGCAATACTGAATTAGGTAAAAAACAAGTAGATCAAACCGTCGCCGCCAT
TATCGACATGAATCAGGATGTGACGCAAAGTTCGCAAATTGTCCAAACCTTAGCCATGCAAGCTGTCGATATTGGCAAAG
TTTTAGATGTGATCCGCGCGATTGCAGAACAAACGAATTTACTGGCCCTCAACGCAGCCATTGAAGCGGCACGAGCGGGC
GATACTGGCCGTGGTTTTGCGGTGGTTGCCGATGAAGTGCGCGCGCTAGCCCACCGTACTCAGTCTTCGACCCGTGAAAT
TGAAGACATGATCAACAAGATCCAGCACGGCACCGAAACCGCTGTGCTATCGATGCAGCACAGTGGCCAAAAGGCAGAGC
AAGCACTCGCTGTCGCAAGGCTCGCTGGGGATGCATTAAACACGATTAACGCTCAAATCAGTACGATGAATAACAGCAAT
ATGGTCATCGCAAGCGCCGCAGAAGAACAAGCCAAAGTCGCCCGTGAGGTTGATAAAAACATTGTTAACATTAGCGATCT
CGCCAGCCAAAGCGCCGCGGGAGCCCAGCAAACCAGTGCATCGGCACATGAACTATCAAGGTTAGCGGTTGAACTGAACA
ACCTACTGACGCGCTTTAAGGTGTAA

Upstream 100 bases:

>100_bases
CAAGCTTCATGGCTCGACAGCAGTGATTAAAAAGTATTAGCTCAAAAGCAGTAAGAACGACCTTAGACGGAACTCATTTA
AATACAGGGACGACTCGCTT

Downstream 100 bases:

>100_bases
AGTCGTCTCGATTTAAGGTCAAAAGCCTCGCTTTTAGATTTGAAGTCAAATCTCGTTTTACAAGGGAACCAGAGGGTAAC
GCACAAGATGTGCTAAAAGA

Product: methyl-accepting chemotaxis sensory transducer

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 541; Mature: 541

Protein sequence:

>541_residues
MWLRQIKIGSRLITAFGLLGLVLLLQGLMSLQTMSSMRASSEEIEKNTLPTLVTLSSINLNVMRARVFTFRLLLADSAAE
RDKGLETLRQIRKNIETDQKAYEPLISLPGEQALYQDFSHNLELYLQNQDQMISKLQANDTTEAKRIMDEVMTLQANKIT
KTLISIGDLNTEYAGKQGELTAQAYEESKLLNSVVIIASLIAAFIVATLLTRSIVQPMKEAVDISVTVASGDLTQKISAD
GEDETSQLMQALAKMQQNLRDTLSHIANSSNQLASAAEELNSVTEDASRGIQQQNDEIQQAATAITEMSSAVDEVANTAV
LASEASEETARNTELGKKQVDQTVAAIIDMNQDVTQSSQIVQTLAMQAVDIGKVLDVIRAIAEQTNLLALNAAIEAARAG
DTGRGFAVVADEVRALAHRTQSSTREIEDMINKIQHGTETAVLSMQHSGQKAEQALAVARLAGDALNTINAQISTMNNSN
MVIASAAEEQAKVAREVDKNIVNISDLASQSAAGAQQTSASAHELSRLAVELNNLLTRFKV

Sequences:

>Translated_541_residues
MWLRQIKIGSRLITAFGLLGLVLLLQGLMSLQTMSSMRASSEEIEKNTLPTLVTLSSINLNVMRARVFTFRLLLADSAAE
RDKGLETLRQIRKNIETDQKAYEPLISLPGEQALYQDFSHNLELYLQNQDQMISKLQANDTTEAKRIMDEVMTLQANKIT
KTLISIGDLNTEYAGKQGELTAQAYEESKLLNSVVIIASLIAAFIVATLLTRSIVQPMKEAVDISVTVASGDLTQKISAD
GEDETSQLMQALAKMQQNLRDTLSHIANSSNQLASAAEELNSVTEDASRGIQQQNDEIQQAATAITEMSSAVDEVANTAV
LASEASEETARNTELGKKQVDQTVAAIIDMNQDVTQSSQIVQTLAMQAVDIGKVLDVIRAIAEQTNLLALNAAIEAARAG
DTGRGFAVVADEVRALAHRTQSSTREIEDMINKIQHGTETAVLSMQHSGQKAEQALAVARLAGDALNTINAQISTMNNSN
MVIASAAEEQAKVAREVDKNIVNISDLASQSAAGAQQTSASAHELSRLAVELNNLLTRFKV
>Mature_541_residues
MWLRQIKIGSRLITAFGLLGLVLLLQGLMSLQTMSSMRASSEEIEKNTLPTLVTLSSINLNVMRARVFTFRLLLADSAAE
RDKGLETLRQIRKNIETDQKAYEPLISLPGEQALYQDFSHNLELYLQNQDQMISKLQANDTTEAKRIMDEVMTLQANKIT
KTLISIGDLNTEYAGKQGELTAQAYEESKLLNSVVIIASLIAAFIVATLLTRSIVQPMKEAVDISVTVASGDLTQKISAD
GEDETSQLMQALAKMQQNLRDTLSHIANSSNQLASAAEELNSVTEDASRGIQQQNDEIQQAATAITEMSSAVDEVANTAV
LASEASEETARNTELGKKQVDQTVAAIIDMNQDVTQSSQIVQTLAMQAVDIGKVLDVIRAIAEQTNLLALNAAIEAARAG
DTGRGFAVVADEVRALAHRTQSSTREIEDMINKIQHGTETAVLSMQHSGQKAEQALAVARLAGDALNTINAQISTMNNSN
MVIASAAEEQAKVAREVDKNIVNISDLASQSAAGAQQTSASAHELSRLAVELNNLLTRFKV

Specific function: May form a pore through which the hemolysin can be exported [H]

COG id: COG0840

COG function: function code NT; Methyl-accepting chemotaxis protein

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI2367378, Length=354, Percent_Identity=30.7909604519774, Blast_Score=137, Evalue=2e-33,
Organism=Escherichia coli, GI1787690, Length=550, Percent_Identity=25.8181818181818, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1788194, Length=360, Percent_Identity=30, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI1788195, Length=302, Percent_Identity=28.476821192053, Blast_Score=119, Evalue=5e-28,
Organism=Escherichia coli, GI1789453, Length=251, Percent_Identity=28.6852589641434, Blast_Score=94, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR000727 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal [H]

EC number: NA

Molecular weight: Translated: 58535; Mature: 58535

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWLRQIKIGSRLITAFGLLGLVLLLQGLMSLQTMSSMRASSEEIEKNTLPTLVTLSSINL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCH
NVMRARVFTFRLLLADSAAERDKGLETLRQIRKNIETDQKAYEPLISLPGEQALYQDFSH
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHCC
NLELYLQNQDQMISKLQANDTTEAKRIMDEVMTLQANKITKTLISIGDLNTEYAGKQGEL
CCEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
TAQAYEESKLLNSVVIIASLIAAFIVATLLTRSIVQPMKEAVDISVTVASGDLTQKISAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCHHHHHCCC
GEDETSQLMQALAKMQQNLRDTLSHIANSSNQLASAAEELNSVTEDASRGIQQQNDEIQQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
AATAITEMSSAVDEVANTAVLASEASEETARNTELGKKQVDQTVAAIIDMNQDVTQSSQI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
VQTLAMQAVDIGKVLDVIRAIAEQTNLLALNAAIEAARAGDTGRGFAVVADEVRALAHRT
HHHHHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
QSSTREIEDMINKIQHGTETAVLSMQHSGQKAEQALAVARLAGDALNTINAQISTMNNSN
HHHHHHHHHHHHHHHCCCHHHHEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCC
MVIASAAEEQAKVAREVDKNIVNISDLASQSAAGAQQTSASAHELSRLAVELNNLLTRFK
EEEEECHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHCHHHHHHHHHHHHHHHHHHHHC
V
C
>Mature Secondary Structure
MWLRQIKIGSRLITAFGLLGLVLLLQGLMSLQTMSSMRASSEEIEKNTLPTLVTLSSINL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCH
NVMRARVFTFRLLLADSAAERDKGLETLRQIRKNIETDQKAYEPLISLPGEQALYQDFSH
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHCC
NLELYLQNQDQMISKLQANDTTEAKRIMDEVMTLQANKITKTLISIGDLNTEYAGKQGEL
CCEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
TAQAYEESKLLNSVVIIASLIAAFIVATLLTRSIVQPMKEAVDISVTVASGDLTQKISAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCHHHHHCCC
GEDETSQLMQALAKMQQNLRDTLSHIANSSNQLASAAEELNSVTEDASRGIQQQNDEIQQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
AATAITEMSSAVDEVANTAVLASEASEETARNTELGKKQVDQTVAAIIDMNQDVTQSSQI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
VQTLAMQAVDIGKVLDVIRAIAEQTNLLALNAAIEAARAGDTGRGFAVVADEVRALAHRT
HHHHHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
QSSTREIEDMINKIQHGTETAVLSMQHSGQKAEQALAVARLAGDALNTINAQISTMNNSN
HHHHHHHHHHHHHHHCCCHHHHEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCC
MVIASAAEEQAKVAREVDKNIVNISDLASQSAAGAQQTSASAHELSRLAVELNNLLTRFK
EEEEECHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHCHHHHHHHHHHHHHHHHHHHHC
V
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2162464; 10952301 [H]