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The map label for this gene is cycH [H]

Identifier: 160873359

GI number: 160873359

Start: 267507

End: 268760

Strand: Reverse

Name: cycH [H]

Synonym: Sbal195_0233

Alternate gene names: 160873359

Gene position: 268760-267507 (Counterclockwise)

Preceding gene: 160873366

Following gene: 160873357

Centisome position: 5.03

GC content: 45.45

Gene sequence:

>1254_bases
ATGACGACATTTTGGATTTTTATTGCGCTTGTTATGTTAGTCGGCCTGATGCTGATTTGGATCCCGCATTTCAGACAGCA
GAAGTTGCTGAAAACTGAAGAAGCCGGAGTTCGTAAACAAACGAACCTTGAATTGTTCAATGAGCGCCTGGGCGTTCTTG
AAAAAGAATTAAGCGAAGAGCTACTGGATCAAGCCGAATTCGATGCATTGAAAAAAGAGCTTGAAATCAGTCTACTCCAA
GACATCAAAGAAGCGAGCGATGATTCACTGGTCAACCAAATCAAGCCAAAGACGATTCTATGGCCGTCGATCATGTCAGT
TTGTTTGATTGTTATCTCAGGCTATCTCTATCAGCATTTAGGTGCCTTCGAGAATATTGAAACTGCCCAACAACCTGCCA
ACCCACATGCGGGAATGGATACGGCTCAAATCATGGCGCAGCGTGTACAGATGATGGAAGCCCAAGTGAAAGCCGAGCCA
GAGAACAGCCAAGTATGGTTCAGCTTAGGCCACGCTTATGTATCGGCAAACCAATACGATAAAGGGATTGCGGCTTTCGA
TAAAGTGATGGATTTAGTCGGAAAACATGCAGAATTATTAGGTCCTAAAGCAACAGCCATGTATTACAAAGCGGGTCAGC
AAATGACACCGCAAATCAAAGCGATCATCGATGAGTCTTTAGCGATGGATGCTCAAGATCCTTCAACGCTATTACTTGTA
GGTATGGATGCCTTCTTTACCGCTGACTACAAGAAAGCCATCGCCTCTTGGCAAACTATTCTTGATAGCGATCGTGCTGA
TGTTGATCGCGCAGCCCTAATGAATGCTATCGAAACCGCTAACTTACGTATGCAGTCTGAAACGGCTGGCATGCCAAATG
ATGAAGCCCACAAGCAAGTGAAGGCGAGTGCGACTAAGTCTGTCAATGTGACTATATCTATCTCTGCAGAACTTGCCGCT
AAAGCCAGTCCTGAAGATACTATCTTTATCTTTGCCCGTGCAACTGAAGGACCAAAAGTCCCATTAGCGGCGACCAAAGT
CAGTGCTAAGTCGCTCCCAATTACGGTGACATTAGATGACAGCAGCGGTATGGGTGGTGATAAGAAGTTGAGTGACGCTA
CCAATGTGGAAGTGATTGCTGTGCTTTCTAAACACGGTAATATCAAACCACAAACTGGCGATCTTCAAGGTAAGATCAGC
ACAGTCGCTGTCGGCGATACCGCCAACCTAGTACTTGATACCCAAGTGCAATAA

Upstream 100 bases:

>100_bases
TACCTTATATTACTGTTCAATGAACAATCTTTACGTATAATCTTGCTTCCAAGCCTAGCGGTTACTCCGCTTTCTGCAAA
CTAAAGTGAATATAGAAACA

Downstream 100 bases:

>100_bases
ACCCAGTTTATTGCAGACATAAAAAAACCGGCTTTGGCCGGTTTTTTATTAACACTGAAAAAATTACTGAGCTTTAGACA
TAAACTCGATAGCTGCTTTG

Product: tetratricopeptide domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 417; Mature: 416

Protein sequence:

>417_residues
MTTFWIFIALVMLVGLMLIWIPHFRQQKLLKTEEAGVRKQTNLELFNERLGVLEKELSEELLDQAEFDALKKELEISLLQ
DIKEASDDSLVNQIKPKTILWPSIMSVCLIVISGYLYQHLGAFENIETAQQPANPHAGMDTAQIMAQRVQMMEAQVKAEP
ENSQVWFSLGHAYVSANQYDKGIAAFDKVMDLVGKHAELLGPKATAMYYKAGQQMTPQIKAIIDESLAMDAQDPSTLLLV
GMDAFFTADYKKAIASWQTILDSDRADVDRAALMNAIETANLRMQSETAGMPNDEAHKQVKASATKSVNVTISISAELAA
KASPEDTIFIFARATEGPKVPLAATKVSAKSLPITVTLDDSSGMGGDKKLSDATNVEVIAVLSKHGNIKPQTGDLQGKIS
TVAVGDTANLVLDTQVQ

Sequences:

>Translated_417_residues
MTTFWIFIALVMLVGLMLIWIPHFRQQKLLKTEEAGVRKQTNLELFNERLGVLEKELSEELLDQAEFDALKKELEISLLQ
DIKEASDDSLVNQIKPKTILWPSIMSVCLIVISGYLYQHLGAFENIETAQQPANPHAGMDTAQIMAQRVQMMEAQVKAEP
ENSQVWFSLGHAYVSANQYDKGIAAFDKVMDLVGKHAELLGPKATAMYYKAGQQMTPQIKAIIDESLAMDAQDPSTLLLV
GMDAFFTADYKKAIASWQTILDSDRADVDRAALMNAIETANLRMQSETAGMPNDEAHKQVKASATKSVNVTISISAELAA
KASPEDTIFIFARATEGPKVPLAATKVSAKSLPITVTLDDSSGMGGDKKLSDATNVEVIAVLSKHGNIKPQTGDLQGKIS
TVAVGDTANLVLDTQVQ
>Mature_416_residues
TTFWIFIALVMLVGLMLIWIPHFRQQKLLKTEEAGVRKQTNLELFNERLGVLEKELSEELLDQAEFDALKKELEISLLQD
IKEASDDSLVNQIKPKTILWPSIMSVCLIVISGYLYQHLGAFENIETAQQPANPHAGMDTAQIMAQRVQMMEAQVKAEPE
NSQVWFSLGHAYVSANQYDKGIAAFDKVMDLVGKHAELLGPKATAMYYKAGQQMTPQIKAIIDESLAMDAQDPSTLLLVG
MDAFFTADYKKAIASWQTILDSDRADVDRAALMNAIETANLRMQSETAGMPNDEAHKQVKASATKSVNVTISISAELAAK
ASPEDTIFIFARATEGPKVPLAATKVSAKSLPITVTLDDSSGMGGDKKLSDATNVEVIAVLSKHGNIKPQTGDLQGKIST
VAVGDTANLVLDTQVQ

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1790513, Length=153, Percent_Identity=34.640522875817, Blast_Score=109, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017560
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45525; Mature: 45394

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTFWIFIALVMLVGLMLIWIPHFRQQKLLKTEEAGVRKQTNLELFNERLGVLEKELSEE
CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
LLDQAEFDALKKELEISLLQDIKEASDDSLVNQIKPKTILWPSIMSVCLIVISGYLYQHL
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHH
GAFENIETAQQPANPHAGMDTAQIMAQRVQMMEAQVKAEPENSQVWFSLGHAYVSANQYD
CCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHEECCCCC
KGIAAFDKVMDLVGKHAELLGPKATAMYYKAGQQMTPQIKAIIDESLAMDAQDPSTLLLV
CHHHHHHHHHHHHCCHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEE
GMDAFFTADYKKAIASWQTILDSDRADVDRAALMNAIETANLRMQSETAGMPNDEAHKQV
ECHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCEEEEHHCCCCCCHHHHHHH
KASATKSVNVTISISAELAAKASPEDTIFIFARATEGPKVPLAATKVSAKSLPITVTLDD
HHHCCCEEEEEEEEEEEHHCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCEEEEEECC
SSGMGGDKKLSDATNVEVIAVLSKHGNIKPQTGDLQGKISTVAVGDTANLVLDTQVQ
CCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEECCCC
>Mature Secondary Structure 
TTFWIFIALVMLVGLMLIWIPHFRQQKLLKTEEAGVRKQTNLELFNERLGVLEKELSEE
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
LLDQAEFDALKKELEISLLQDIKEASDDSLVNQIKPKTILWPSIMSVCLIVISGYLYQHL
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHH
GAFENIETAQQPANPHAGMDTAQIMAQRVQMMEAQVKAEPENSQVWFSLGHAYVSANQYD
CCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHEECCCCC
KGIAAFDKVMDLVGKHAELLGPKATAMYYKAGQQMTPQIKAIIDESLAMDAQDPSTLLLV
CHHHHHHHHHHHHCCHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEE
GMDAFFTADYKKAIASWQTILDSDRADVDRAALMNAIETANLRMQSETAGMPNDEAHKQV
ECHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCEEEEHHCCCCCCHHHHHHH
KASATKSVNVTISISAELAAKASPEDTIFIFARATEGPKVPLAATKVSAKSLPITVTLDD
HHHCCCEEEEEEEEEEEHHCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCEEEEEECC
SSGMGGDKKLSDATNVEVIAVLSKHGNIKPQTGDLQGKISTVAVGDTANLVLDTQVQ
CCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]