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The map label for this gene is ydiF [H]

Identifier: 159901456

GI number: 159901456

Start: 6271371

End: 6273056

Strand: Reverse

Name: ydiF [H]

Synonym: Haur_4945

Alternate gene names: 159901456

Gene position: 6273056-6271371 (Counterclockwise)

Preceding gene: 159901458

Following gene: 159901422

Centisome position: 98.84

GC content: 51.13

Gene sequence:

>1686_bases
ATGATTATCGCTAGCGCTCAGGATGTTCACTACAGCATTGGTGGTCGAAGTATTCTCAACGGCCTAAATTGGGAAATTCA
CGAACACGCCCGCATCGGCTTGGTTGGCTCGAATGGTGCAGGCAAATCGACGTTGCTGCGCTTATTGGCAGGCTTTGAAA
CGCCGACGGCTGGCCACATTAGCACACGGCGCGGATTACGCATTGCCTACCTTTCGCAGCATATCGTGGGCGATCAGCGC
ACACCGTTGCAAACCGTCATGGCCGCCCGCCCTGATTTGACTGAGCTTGAAGCCCAAATTCAGGCCTGCGAAAACCAACT
AGGCGAGCCAGTGATCGCCAACGATCTTCAGCGGATGAATCAGGTTTTAGAGCGTCACAGTCGCCTATTGAACCAATTCG
AGGAGCTGGGTGGCTCAATGCTCTATAACGATGCTCGTGGCTATTTACAGCAATTTGGCTTCGATGGCAACGATCTGAAT
TTGCCAACCAACTCGCTCAGCGGCGGCCAACGCAAAATGATCGGCTTGGCTAGCTGTTTGATTCAACGCCCTGATTTATT
GCTGCTCGACGAGCCAGAGACCCACCTCGATTTGAACCGCCGCGAGTTTTTAGAGACGACAATTCGTGAGTTTGCTGGGG
CGGTGGTGATTGTCGCCCACGATCGCTATTTGCTCGATGAAACCATCACCAGCGTTGTGCATTTGGAAGCTGGCAAAACT
AGCCTCTGGCTTGGCAATTATTCGACCTACGCCGTCAATCGCCAATTGGCTTTGCAACGCCAGCAGCAAGATTTTATGGC
GCAACAAAAGGAAATTAATCGCTTAGAAGAAGCAATTAAGCGCTTTCAATTGTGGGCATCGTTAGTTCCCAACGAGCGCC
ATATCAAGCAGGCGCGGGTCAAGCAAATGCAGATTGATAAGATGGATAAAGTTGAAAAGCCCGTGTTGGAGCGGCGCAAA
GTCGGCTTGAGCCTACGCTCCGAGCAACGTGGCGGCCAAAAAATCATCGATCTACGTGATGTCAGTATGAGCTTTGGCGA
CGATTTAGTGCTTCTGGGAATTGAACAAACCATCTGGCGCGGCGAACGGGTTGGGATCGTCGGCCAAAATGGCGCGGGCA
AAAGTCTGCTTGGTAAGTTGATGCATGGGCAATTTGAGCCAAGCGATGGCATGGTTTGGGTTGGCCCATCGATCGAAATT
GGCTATTTTGCCCAAGGCGTTGAGACGCTTGATCATAGCCAAACGCCGATTGATGTAGTACGCCTCACGCGTTCGATGTA
CGAGGGCCAAGCGGTGGCATTTTTAGGTGGATTTTTGTTTAGTTATGCTCAATGTCGCCAAAGCATCGGCTCGCTTTCTG
GTGGCGAACGGGCACGCTTGCAATTAGCATTGTTGATGTTAGCCAAACCCAATTGTCTAATTCTTGATGAGCCGACCAAC
CATTTAGATATTGATTCGGTCGAAGTCTTGGAAGATGCCCTAGAACGCTACGACGGCACAGTGATTGTGATTTCGCACGA
CCGCTACTTTCTTGATCGCGTGGTTGATCGAGTTTGGGCTGTCAATGATGGTAGCATCAAAGCTCACCTTGGCGGCTACA
GTGCTTGGCGTGAAGCTAGTAAAGCCCCGCCAGCGCCCATTATCGAGCCGGTAGTGGTTAAGACTAAGGCCAAAGTTAAA
CGATAG

Upstream 100 bases:

>100_bases
CGATTGAAACCAAATGATTAAGACTAGGGGCAGCATTATGCGCCCCTAGTCTTTTTTGATGCTCGTGCATAGTGCTGCCC
CCGATTTTGGAGGTTGCCCA

Downstream 100 bases:

>100_bases
AAGGGATGAAGAACATAGAACATAGAGCATAGAACATAGGGATTGGAAATCAGGCTAGAGGCTTTGGGCTATGGGAACAT
CATTCGTGCAATTCGTGGCT

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 561; Mature: 561

Protein sequence:

>561_residues
MIIASAQDVHYSIGGRSILNGLNWEIHEHARIGLVGSNGAGKSTLLRLLAGFETPTAGHISTRRGLRIAYLSQHIVGDQR
TPLQTVMAARPDLTELEAQIQACENQLGEPVIANDLQRMNQVLERHSRLLNQFEELGGSMLYNDARGYLQQFGFDGNDLN
LPTNSLSGGQRKMIGLASCLIQRPDLLLLDEPETHLDLNRREFLETTIREFAGAVVIVAHDRYLLDETITSVVHLEAGKT
SLWLGNYSTYAVNRQLALQRQQQDFMAQQKEINRLEEAIKRFQLWASLVPNERHIKQARVKQMQIDKMDKVEKPVLERRK
VGLSLRSEQRGGQKIIDLRDVSMSFGDDLVLLGIEQTIWRGERVGIVGQNGAGKSLLGKLMHGQFEPSDGMVWVGPSIEI
GYFAQGVETLDHSQTPIDVVRLTRSMYEGQAVAFLGGFLFSYAQCRQSIGSLSGGERARLQLALLMLAKPNCLILDEPTN
HLDIDSVEVLEDALERYDGTVIVISHDRYFLDRVVDRVWAVNDGSIKAHLGGYSAWREASKAPPAPIIEPVVVKTKAKVK
R

Sequences:

>Translated_561_residues
MIIASAQDVHYSIGGRSILNGLNWEIHEHARIGLVGSNGAGKSTLLRLLAGFETPTAGHISTRRGLRIAYLSQHIVGDQR
TPLQTVMAARPDLTELEAQIQACENQLGEPVIANDLQRMNQVLERHSRLLNQFEELGGSMLYNDARGYLQQFGFDGNDLN
LPTNSLSGGQRKMIGLASCLIQRPDLLLLDEPETHLDLNRREFLETTIREFAGAVVIVAHDRYLLDETITSVVHLEAGKT
SLWLGNYSTYAVNRQLALQRQQQDFMAQQKEINRLEEAIKRFQLWASLVPNERHIKQARVKQMQIDKMDKVEKPVLERRK
VGLSLRSEQRGGQKIIDLRDVSMSFGDDLVLLGIEQTIWRGERVGIVGQNGAGKSLLGKLMHGQFEPSDGMVWVGPSIEI
GYFAQGVETLDHSQTPIDVVRLTRSMYEGQAVAFLGGFLFSYAQCRQSIGSLSGGERARLQLALLMLAKPNCLILDEPTN
HLDIDSVEVLEDALERYDGTVIVISHDRYFLDRVVDRVWAVNDGSIKAHLGGYSAWREASKAPPAPIIEPVVVKTKAKVK
R
>Mature_561_residues
MIIASAQDVHYSIGGRSILNGLNWEIHEHARIGLVGSNGAGKSTLLRLLAGFETPTAGHISTRRGLRIAYLSQHIVGDQR
TPLQTVMAARPDLTELEAQIQACENQLGEPVIANDLQRMNQVLERHSRLLNQFEELGGSMLYNDARGYLQQFGFDGNDLN
LPTNSLSGGQRKMIGLASCLIQRPDLLLLDEPETHLDLNRREFLETTIREFAGAVVIVAHDRYLLDETITSVVHLEAGKT
SLWLGNYSTYAVNRQLALQRQQQDFMAQQKEINRLEEAIKRFQLWASLVPNERHIKQARVKQMQIDKMDKVEKPVLERRK
VGLSLRSEQRGGQKIIDLRDVSMSFGDDLVLLGIEQTIWRGERVGIVGQNGAGKSLLGKLMHGQFEPSDGMVWVGPSIEI
GYFAQGVETLDHSQTPIDVVRLTRSMYEGQAVAFLGGFLFSYAQCRQSIGSLSGGERARLQLALLMLAKPNCLILDEPTN
HLDIDSVEVLEDALERYDGTVIVISHDRYFLDRVVDRVWAVNDGSIKAHLGGYSAWREASKAPPAPIIEPVVVKTKAKVK
R

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=542, Percent_Identity=30.4428044280443, Blast_Score=223, Evalue=3e-58,
Organism=Homo sapiens, GI27881506, Length=550, Percent_Identity=28.3636363636364, Blast_Score=206, Evalue=4e-53,
Organism=Homo sapiens, GI10947137, Length=550, Percent_Identity=28.3636363636364, Blast_Score=206, Evalue=4e-53,
Organism=Homo sapiens, GI10947135, Length=568, Percent_Identity=28.6971830985916, Blast_Score=181, Evalue=2e-45,
Organism=Homo sapiens, GI69354671, Length=553, Percent_Identity=28.9330922242315, Blast_Score=180, Evalue=3e-45,
Organism=Homo sapiens, GI148612844, Length=221, Percent_Identity=28.5067873303167, Blast_Score=70, Evalue=7e-12,
Organism=Homo sapiens, GI255708477, Length=221, Percent_Identity=28.5067873303167, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI42741659, Length=216, Percent_Identity=27.7777777777778, Blast_Score=66, Evalue=9e-11,
Organism=Escherichia coli, GI1789751, Length=541, Percent_Identity=31.9778188539741, Blast_Score=271, Evalue=7e-74,
Organism=Escherichia coli, GI2367384, Length=573, Percent_Identity=30.7155322862129, Blast_Score=249, Evalue=3e-67,
Organism=Escherichia coli, GI1787041, Length=546, Percent_Identity=29.1208791208791, Blast_Score=216, Evalue=3e-57,
Organism=Escherichia coli, GI1787182, Length=551, Percent_Identity=29.7640653357532, Blast_Score=214, Evalue=1e-56,
Organism=Escherichia coli, GI1788165, Length=194, Percent_Identity=30.4123711340206, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1789891, Length=246, Percent_Identity=28.8617886178862, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1786345, Length=219, Percent_Identity=27.3972602739726, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI1789672, Length=215, Percent_Identity=27.4418604651163, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI48994883, Length=233, Percent_Identity=25.7510729613734, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1790525, Length=217, Percent_Identity=23.5023041474654, Blast_Score=64, Evalue=4e-11,
Organism=Escherichia coli, GI1787500, Length=236, Percent_Identity=25, Blast_Score=64, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17553372, Length=539, Percent_Identity=30.9833024118738, Blast_Score=220, Evalue=2e-57,
Organism=Caenorhabditis elegans, GI17559834, Length=525, Percent_Identity=29.1428571428571, Blast_Score=212, Evalue=3e-55,
Organism=Caenorhabditis elegans, GI17555318, Length=539, Percent_Identity=26.3450834879406, Blast_Score=189, Evalue=3e-48,
Organism=Saccharomyces cerevisiae, GI6321121, Length=567, Percent_Identity=28.7477954144621, Blast_Score=216, Evalue=6e-57,
Organism=Saccharomyces cerevisiae, GI6320874, Length=538, Percent_Identity=28.8104089219331, Blast_Score=204, Evalue=3e-53,
Organism=Saccharomyces cerevisiae, GI6325030, Length=406, Percent_Identity=25.615763546798, Blast_Score=103, Evalue=1e-22,
Organism=Saccharomyces cerevisiae, GI6324314, Length=242, Percent_Identity=29.3388429752066, Blast_Score=90, Evalue=1e-18,
Organism=Saccharomyces cerevisiae, GI6323278, Length=260, Percent_Identity=28.4615384615385, Blast_Score=77, Evalue=7e-15,
Organism=Drosophila melanogaster, GI24666836, Length=542, Percent_Identity=30.4428044280443, Blast_Score=241, Evalue=9e-64,
Organism=Drosophila melanogaster, GI24642252, Length=534, Percent_Identity=27.5280898876405, Blast_Score=211, Evalue=1e-54,
Organism=Drosophila melanogaster, GI18859989, Length=534, Percent_Identity=27.5280898876405, Blast_Score=211, Evalue=1e-54,
Organism=Drosophila melanogaster, GI24641342, Length=543, Percent_Identity=29.6500920810313, Blast_Score=206, Evalue=2e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 62638; Mature: 62638

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIASAQDVHYSIGGRSILNGLNWEIHEHARIGLVGSNGAGKSTLLRLLAGFETPTAGHI
CEEECCCCCEEECCCHHHHCCCCCEEECCEEEEEEECCCCCHHHHHHHHHCCCCCCCCCC
STRRGLRIAYLSQHIVGDQRTPLQTVMAARPDLTELEAQIQACENQLGEPVIANDLQRMN
HHCCCCEEEEHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
QVLERHSRLLNQFEELGGSMLYNDARGYLQQFGFDGNDLNLPTNSLSGGQRKMIGLASCL
HHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
IQRPDLLLLDEPETHLDLNRREFLETTIREFAGAVVIVAHDRYLLDETITSVVHLEAGKT
HCCCCEEEECCCCHHCCCCHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHEEEECCCE
SLWLGNYSTYAVNRQLALQRQQQDFMAQQKEINRLEEAIKRFQLWASLVPNERHIKQARV
EEEECCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
KQMQIDKMDKVEKPVLERRKVGLSLRSEQRGGQKIIDLRDVSMSFGDDLVLLGIEQTIWR
HHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCEEEEHHHCCCCCCCCEEEEECHHHHHC
GERVGIVGQNGAGKSLLGKLMHGQFEPSDGMVWVGPSIEIGYFAQGVETLDHSQTPIDVV
CCEEEEEECCCCCHHHHHHHHCCCCCCCCCEEEECCCEEEHHHHHHHHHHCCCCCCHHHH
RLTRSMYEGQAVAFLGGFLFSYAQCRQSIGSLSGGERARLQLALLMLAKPNCLILDEPTN
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCC
HLDIDSVEVLEDALERYDGTVIVISHDRYFLDRVVDRVWAVNDGSIKAHLGGYSAWREAS
CCCCCHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHEECCCCCEEEECCCCHHHHHHC
KAPPAPIIEPVVVKTKAKVKR
CCCCCCCCCCCEEECHHHCCC
>Mature Secondary Structure
MIIASAQDVHYSIGGRSILNGLNWEIHEHARIGLVGSNGAGKSTLLRLLAGFETPTAGHI
CEEECCCCCEEECCCHHHHCCCCCEEECCEEEEEEECCCCCHHHHHHHHHCCCCCCCCCC
STRRGLRIAYLSQHIVGDQRTPLQTVMAARPDLTELEAQIQACENQLGEPVIANDLQRMN
HHCCCCEEEEHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
QVLERHSRLLNQFEELGGSMLYNDARGYLQQFGFDGNDLNLPTNSLSGGQRKMIGLASCL
HHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
IQRPDLLLLDEPETHLDLNRREFLETTIREFAGAVVIVAHDRYLLDETITSVVHLEAGKT
HCCCCEEEECCCCHHCCCCHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHEEEECCCE
SLWLGNYSTYAVNRQLALQRQQQDFMAQQKEINRLEEAIKRFQLWASLVPNERHIKQARV
EEEECCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
KQMQIDKMDKVEKPVLERRKVGLSLRSEQRGGQKIIDLRDVSMSFGDDLVLLGIEQTIWR
HHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCEEEEHHHCCCCCCCCEEEEECHHHHHC
GERVGIVGQNGAGKSLLGKLMHGQFEPSDGMVWVGPSIEIGYFAQGVETLDHSQTPIDVV
CCEEEEEECCCCCHHHHHHHHCCCCCCCCCEEEECCCEEEHHHHHHHHHHCCCCCCHHHH
RLTRSMYEGQAVAFLGGFLFSYAQCRQSIGSLSGGERARLQLALLMLAKPNCLILDEPTN
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCC
HLDIDSVEVLEDALERYDGTVIVISHDRYFLDRVVDRVWAVNDGSIKAHLGGYSAWREAS
CCCCCHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHEECCCCCEEEECCCCHHHHHHC
KAPPAPIIEPVVVKTKAKVKR
CCCCCCCCCCCEEECHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]