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The map label for this gene is secY [H]

Identifier: 159901445

GI number: 159901445

Start: 6263638

End: 6264957

Strand: Direct

Name: secY [H]

Synonym: Haur_4934

Alternate gene names: 159901445

Gene position: 6263638-6264957 (Clockwise)

Preceding gene: 159901444

Following gene: 159901446

Centisome position: 98.69

GC content: 50.15

Gene sequence:

>1320_bases
ATGCTTCAAGCTGTGGTCAACGCGCTTAAAATCGCCGAAGTGCGTAAGAAAATTTTGTTCACCATGATGATGCTGGTGAT
CTTCCGCTTTATCGCGGCTATCCCAGTGCCAGGGGTCGATACAGCCGAACTCGATCGGTTGTTTAATGGTCAGTTGCCGT
TGAGCGATTTGGCTAACTTCCTCAACTTGCTCTCGGGTGGGGCGTTGCGGCAGTTCTCGGTCGCAGCCATGGGGGTCTAT
CCCTACATCACGGCTCAAATTATTATGCAGTTGCTGATTCCGTTGATCCCAGCGCTGGAGCAATTGAGCAAAGAGGGTGA
GCAGGGCCGCAATCGTATTCAGCGCTATCAGTATTTCCTCACCGTGCCACTGGCCTATCTCCAAGGCTATGGCCAAATTA
AATCCTTGATCAACAGCGGGATTAATTTGTTCGGTACGTTGAATTTCAGCATCACCGAAAACTTCTTCCAAACCTTCTCG
ATCTTGACGATTATGGTTTCAGGCTCGATGTTCTTGGTTTGGATGGGTGAGTTGATCGACGAACGCGGGATTGGTAATGG
GCTCTCGATGATTATCTTCGGCGGGATTGTTACGGCTCTGCCAAGTATGGTTTATCAAGCAATCACCACCTCAAGCTCAG
GCAATAACGTCATCGGCGGGATTTTGCTGCTGATCGTGACCTTGGCGACCGTGGTGGGGATTGTGTTGATCACCGAAGGC
CAACGCCGCATTCCAGTTCAATATGCCAAGCGCGTGCGCGGCAACAAGGTCTATGGCGGTCAATCAAGCCACTTGCCATT
AAAGGTCAATATGGCTGGGATGATTCCCTTGATCTTCGCCCAAAGCATTTTGATTTTCCCCAGCACCGTTGCTTCCTACT
TCTGGAATCCCAACGGTTCGGGCTTCTTCAATGGCGTTGCCAACTTCTTCGTCAATAGCTTTGGCCCGAATGGCTTGGCC
TTTACCTTGGCGATGTTTGTATTGGTCTTGCTCTTCACCTACTTCTATGCCTTGGTGATGTTCAACCAACAAAATTTGCC
TGAAATGTTGCAACGCAACGGCGGCTTTATTCCAGGCATTCGCCCAGGTCGCAACACCGAAGTCTATTTGACCAAAGTCT
TGAACCGCATCACCTTGATTGGCGCGGTTGGCTTGGCGGTAGTTGCAGCCTTGCCCTATTTTGTGCAACAAATTACCGGC
TTGCAAATTGGCTTTAGCAGCACCGGTTTGTTGATTGTGGTTGGTGTGGCGGTCGATACCATGCGCCAACTCGAAGCCCA
AATGATGATGCGCAATTACGAAGGCTTCATCTCGCGCTAA

Upstream 100 bases:

>100_bases
GGTGATGCGATGACCTTCTCTTGCGACGGCGTAGCGGGCTTTGCCCAAGGCTACGCCGTTTGCAAATGAAGGTCATTCGT
GCATTGCACAGGAGAATTCC

Downstream 100 bases:

>100_bases
GAAACGCTAACTGCTGTGGGCAGGCGGCGCTATGGCGAACAACGGCGTTCGCCATCCTTTGCTGACTCACCGAGGAGCAC
TGACCTATGAACATCATTTT

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MLQAVVNALKIAEVRKKILFTMMMLVIFRFIAAIPVPGVDTAELDRLFNGQLPLSDLANFLNLLSGGALRQFSVAAMGVY
PYITAQIIMQLLIPLIPALEQLSKEGEQGRNRIQRYQYFLTVPLAYLQGYGQIKSLINSGINLFGTLNFSITENFFQTFS
ILTIMVSGSMFLVWMGELIDERGIGNGLSMIIFGGIVTALPSMVYQAITTSSSGNNVIGGILLLIVTLATVVGIVLITEG
QRRIPVQYAKRVRGNKVYGGQSSHLPLKVNMAGMIPLIFAQSILIFPSTVASYFWNPNGSGFFNGVANFFVNSFGPNGLA
FTLAMFVLVLLFTYFYALVMFNQQNLPEMLQRNGGFIPGIRPGRNTEVYLTKVLNRITLIGAVGLAVVAALPYFVQQITG
LQIGFSSTGLLIVVGVAVDTMRQLEAQMMMRNYEGFISR

Sequences:

>Translated_439_residues
MLQAVVNALKIAEVRKKILFTMMMLVIFRFIAAIPVPGVDTAELDRLFNGQLPLSDLANFLNLLSGGALRQFSVAAMGVY
PYITAQIIMQLLIPLIPALEQLSKEGEQGRNRIQRYQYFLTVPLAYLQGYGQIKSLINSGINLFGTLNFSITENFFQTFS
ILTIMVSGSMFLVWMGELIDERGIGNGLSMIIFGGIVTALPSMVYQAITTSSSGNNVIGGILLLIVTLATVVGIVLITEG
QRRIPVQYAKRVRGNKVYGGQSSHLPLKVNMAGMIPLIFAQSILIFPSTVASYFWNPNGSGFFNGVANFFVNSFGPNGLA
FTLAMFVLVLLFTYFYALVMFNQQNLPEMLQRNGGFIPGIRPGRNTEVYLTKVLNRITLIGAVGLAVVAALPYFVQQITG
LQIGFSSTGLLIVVGVAVDTMRQLEAQMMMRNYEGFISR
>Mature_439_residues
MLQAVVNALKIAEVRKKILFTMMMLVIFRFIAAIPVPGVDTAELDRLFNGQLPLSDLANFLNLLSGGALRQFSVAAMGVY
PYITAQIIMQLLIPLIPALEQLSKEGEQGRNRIQRYQYFLTVPLAYLQGYGQIKSLINSGINLFGTLNFSITENFFQTFS
ILTIMVSGSMFLVWMGELIDERGIGNGLSMIIFGGIVTALPSMVYQAITTSSSGNNVIGGILLLIVTLATVVGIVLITEG
QRRIPVQYAKRVRGNKVYGGQSSHLPLKVNMAGMIPLIFAQSILIFPSTVASYFWNPNGSGFFNGVANFFVNSFGPNGLA
FTLAMFVLVLLFTYFYALVMFNQQNLPEMLQRNGGFIPGIRPGRNTEVYLTKVLNRITLIGAVGLAVVAALPYFVQQITG
LQIGFSSTGLLIVVGVAVDTMRQLEAQMMMRNYEGFISR

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=431, Percent_Identity=38.5150812064965, Blast_Score=272, Evalue=3e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 48174; Mature: 48174

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: PS00755 SECY_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQAVVNALKIAEVRKKILFTMMMLVIFRFIAAIPVPGVDTAELDRLFNGQLPLSDLANF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHH
LNLLSGGALRQFSVAAMGVYPYITAQIIMQLLIPLIPALEQLSKEGEQGRNRIQRYQYFL
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVPLAYLQGYGQIKSLINSGINLFGTLNFSITENFFQTFSILTIMVSGSMFLVWMGELID
HHHHHHHHCHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
ERGIGNGLSMIIFGGIVTALPSMVYQAITTSSSGNNVIGGILLLIVTLATVVGIVLITEG
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
QRRIPVQYAKRVRGNKVYGGQSSHLPLKVNMAGMIPLIFAQSILIFPSTVASYFWNPNGS
CCCCCHHHHHHHCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
GFFNGVANFFVNSFGPNGLAFTLAMFVLVLLFTYFYALVMFNQQNLPEMLQRNGGFIPGI
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCC
RPGRNTEVYLTKVLNRITLIGAVGLAVVAALPYFVQQITGLQIGFSSTGLLIVVGVAVDT
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEEHHHHHHH
MRQLEAQMMMRNYEGFISR
HHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLQAVVNALKIAEVRKKILFTMMMLVIFRFIAAIPVPGVDTAELDRLFNGQLPLSDLANF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHH
LNLLSGGALRQFSVAAMGVYPYITAQIIMQLLIPLIPALEQLSKEGEQGRNRIQRYQYFL
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVPLAYLQGYGQIKSLINSGINLFGTLNFSITENFFQTFSILTIMVSGSMFLVWMGELID
HHHHHHHHCHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
ERGIGNGLSMIIFGGIVTALPSMVYQAITTSSSGNNVIGGILLLIVTLATVVGIVLITEG
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
QRRIPVQYAKRVRGNKVYGGQSSHLPLKVNMAGMIPLIFAQSILIFPSTVASYFWNPNGS
CCCCCHHHHHHHCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
GFFNGVANFFVNSFGPNGLAFTLAMFVLVLLFTYFYALVMFNQQNLPEMLQRNGGFIPGI
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCC
RPGRNTEVYLTKVLNRITLIGAVGLAVVAALPYFVQQITGLQIGFSSTGLLIVVGVAVDT
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEEHHHHHHH
MRQLEAQMMMRNYEGFISR
HHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9350347; 12788972 [H]