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The map label for this gene is ysdC [H]

Identifier: 159901396

GI number: 159901396

Start: 6220511

End: 6221593

Strand: Reverse

Name: ysdC [H]

Synonym: Haur_4885

Alternate gene names: 159901396

Gene position: 6221593-6220511 (Counterclockwise)

Preceding gene: 159901397

Following gene: 159901395

Centisome position: 98.03

GC content: 52.82

Gene sequence:

>1083_bases
GTGGATGAACGTTTAGCACTTATGAAGGCTTTGACCGATGCATCGGGCGTACCAGGCAACGAAGGGCCAGTTCGCGCTGT
TATGGCCGAGGCCTTAGCTCCCTATGGCGAACTCATTAATGATCAGCTTGGCAGTGTCGCTGCTCGTAAAGCTGGCCCCG
AAGGCAGCCCCACAATTTTATTGGCGGGCCACCTCGATGAAGTGGGCTTTATGGTAACGCGGATCACCGACGATGGTTTT
ATTAAATTCCAAGCACTTGGTGGCTGGTGGGAATTGGTGATGTTGGCACAACGAGTGCAAATTGAAACCCGTAATGGGCC
AATCGCTGGCCTTATTGGCTCAAAGCCGCCGCATGTGCTCTCGCCCGAAGCACGCAAAAAATTGGTCGAAAAGAAAGATA
TGTTTATTGATATTGGGGCGAGTTCAGCCGCTGAGGCCCGTGAATGGGGCGTGCGTCCAGGCGATTCAATTCTGCCAGTG
TGCCCGTTTACCCCCTTACACAACCCCAAAATCGTCATGGCCAAGGCTTGGGATAATCGCTTTGGTTGTGCGGCAGCGGT
TGAAGTGTTGCATGAGTTGGCCAATGAAAGCTTGCCTAACACGGTCGTGGCCGGTGCAACTGTGCAAGAAGAAGTTGGCT
TGCGTGGCGCAGCAACCCTTGCCAATGTGGTTAAGCCTGATATCGCGTTTGCGATCGATGTGTGTATTGCAGGCGATACT
CCAGGCATTAGTAAAGATGAAGCTCAAGCCAAAATGGGCGCTGGCCCAGTCTTGTTATTGATGGATAGCAGCGTTATTCC
AAACCCGCGGCTGCGCGACTTGGTGGTTGATACCGCCGAAGAGTTGGGCATTCCCTATCAATTTGATACGATGCCTGGTG
GTGGTACCGATGCAGGTCGCTTTCATCTAAATAATGCTGGGGTTCCATCGTTGGCGCTGGGTGTGGCAACCCGCTACATC
CATACTCACGCTTCGTTGTTGCATCGCGACGATTTTGATCAGGTGGTGACCTTGCTGGCCGCCGTGGTACGCAAGCTCGA
TCAAGCCACTGTCGATTACATCAAAACTGGGCAATCGGCCTAA

Upstream 100 bases:

>100_bases
GTTGATCATAATCGGCTTTTGAGCACTTGTCAATTGTGGTTATGCGCAAATTAGCATAGAATGCTGCTAGCAACCGCTTA
ACTGCAAAGGAAGCATCACC

Downstream 100 bases:

>100_bases
ATTTTTAATCCCTCACCCCAACCCCTCGTCCGCCGTAGTGGGCGAGGGGCTATTCTATTCTGAGGTATAGCGGCATGCTG
CTACGCTTATTAGCAGGATT

Product: glutamyl aminopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 360

Protein sequence:

>360_residues
MDERLALMKALTDASGVPGNEGPVRAVMAEALAPYGELINDQLGSVAARKAGPEGSPTILLAGHLDEVGFMVTRITDDGF
IKFQALGGWWELVMLAQRVQIETRNGPIAGLIGSKPPHVLSPEARKKLVEKKDMFIDIGASSAAEAREWGVRPGDSILPV
CPFTPLHNPKIVMAKAWDNRFGCAAAVEVLHELANESLPNTVVAGATVQEEVGLRGAATLANVVKPDIAFAIDVCIAGDT
PGISKDEAQAKMGAGPVLLLMDSSVIPNPRLRDLVVDTAEELGIPYQFDTMPGGGTDAGRFHLNNAGVPSLALGVATRYI
HTHASLLHRDDFDQVVTLLAAVVRKLDQATVDYIKTGQSA

Sequences:

>Translated_360_residues
MDERLALMKALTDASGVPGNEGPVRAVMAEALAPYGELINDQLGSVAARKAGPEGSPTILLAGHLDEVGFMVTRITDDGF
IKFQALGGWWELVMLAQRVQIETRNGPIAGLIGSKPPHVLSPEARKKLVEKKDMFIDIGASSAAEAREWGVRPGDSILPV
CPFTPLHNPKIVMAKAWDNRFGCAAAVEVLHELANESLPNTVVAGATVQEEVGLRGAATLANVVKPDIAFAIDVCIAGDT
PGISKDEAQAKMGAGPVLLLMDSSVIPNPRLRDLVVDTAEELGIPYQFDTMPGGGTDAGRFHLNNAGVPSLALGVATRYI
HTHASLLHRDDFDQVVTLLAAVVRKLDQATVDYIKTGQSA
>Mature_360_residues
MDERLALMKALTDASGVPGNEGPVRAVMAEALAPYGELINDQLGSVAARKAGPEGSPTILLAGHLDEVGFMVTRITDDGF
IKFQALGGWWELVMLAQRVQIETRNGPIAGLIGSKPPHVLSPEARKKLVEKKDMFIDIGASSAAEAREWGVRPGDSILPV
CPFTPLHNPKIVMAKAWDNRFGCAAAVEVLHELANESLPNTVVAGATVQEEVGLRGAATLANVVKPDIAFAIDVCIAGDT
PGISKDEAQAKMGAGPVLLLMDSSVIPNPRLRDLVVDTAEELGIPYQFDTMPGGGTDAGRFHLNNAGVPSLALGVATRYI
HTHASLLHRDDFDQVVTLLAAVVRKLDQATVDYIKTGQSA

Specific function: Putative aminopeptidase [H]

COG id: COG1363

COG function: function code G; Cellulase M and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M42 family [H]

Homologues:

Organism=Escherichia coli, GI1790332, Length=350, Percent_Identity=39.7142857142857, Blast_Score=250, Evalue=8e-68,
Organism=Escherichia coli, GI1788727, Length=349, Percent_Identity=36.9627507163324, Blast_Score=184, Evalue=9e-48,
Organism=Escherichia coli, GI87082417, Length=342, Percent_Identity=30.4093567251462, Blast_Score=152, Evalue=2e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008007 [H]

Pfam domain/function: PF05343 Peptidase_M42 [H]

EC number: NA

Molecular weight: Translated: 38129; Mature: 38129

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDERLALMKALTDASGVPGNEGPVRAVMAEALAPYGELINDQLGSVAARKAGPEGSPTIL
CCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
LAGHLDEVGFMVTRITDDGFIKFQALGGWWELVMLAQRVQIETRNGPIAGLIGSKPPHVL
EEECCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHEEEECCCCEEEECCCCCCCCC
SPEARKKLVEKKDMFIDIGASSAAEAREWGVRPGDSILPVCPFTPLHNPKIVMAKAWDNR
CHHHHHHHHHHCCCEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC
FGCAAAVEVLHELANESLPNTVVAGATVQEEVGLRGAATLANVVKPDIAFAIDVCIAGDT
CCHHHHHHHHHHHHHCCCCCCEEECCCHHHHHCCCHHHHHHHHHCCCCEEEEEEEEECCC
PGISKDEAQAKMGAGPVLLLMDSSVIPNPRLRDLVVDTAEELGIPYQFDTMPGGGTDAGR
CCCCCHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCE
FHLNNAGVPSLALGVATRYIHTHASLLHRDDFDQVVTLLAAVVRKLDQATVDYIKTGQSA
EEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDERLALMKALTDASGVPGNEGPVRAVMAEALAPYGELINDQLGSVAARKAGPEGSPTIL
CCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
LAGHLDEVGFMVTRITDDGFIKFQALGGWWELVMLAQRVQIETRNGPIAGLIGSKPPHVL
EEECCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHEEEECCCCEEEECCCCCCCCC
SPEARKKLVEKKDMFIDIGASSAAEAREWGVRPGDSILPVCPFTPLHNPKIVMAKAWDNR
CHHHHHHHHHHCCCEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC
FGCAAAVEVLHELANESLPNTVVAGATVQEEVGLRGAATLANVVKPDIAFAIDVCIAGDT
CCHHHHHHHHHHHHHCCCCCCEEECCCHHHHHCCCHHHHHHHHHCCCCEEEEEEEEECCC
PGISKDEAQAKMGAGPVLLLMDSSVIPNPRLRDLVVDTAEELGIPYQFDTMPGGGTDAGR
CCCCCHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCE
FHLNNAGVPSLALGVATRYIHTHASLLHRDDFDQVVTLLAAVVRKLDQATVDYIKTGQSA
EEECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]