| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159901394
Identifier: 159901394
GI number: 159901394
Start: 6218974
End: 6219618
Strand: Direct
Name: 159901394
Synonym: Haur_4883
Alternate gene names: NA
Gene position: 6218974-6219618 (Clockwise)
Preceding gene: 159901393
Following gene: 159901400
Centisome position: 97.99
GC content: 45.58
Gene sequence:
>645_bases ATGCGCTTACTGGTTGCAGCTTTTTTGGCCTTTATGCTTTCAACAACGGGCTTTTTTACCTTTTTGCCAAGCGCCGCCAA ATTAACCACTCCCTTGGTTTGCAACGGCGGTACAATCATTCCACCAGCATCGATCACGCGTAAAAGCAAATTTTATTGTG AGAAAAATGGAACGCAAAGCCTGATTAACCCATTTTTGCTGCTAGCAAGTGGGGCTTTGGTCTATACCCCGTTGTTTTAT CTAGCGTTATTGTTGGTTAAGCCGAAACAAACTACGCTCGGTGGGCAACAACCAAAGCAACCAAAACCATCGAAGGCTGT CGTTGATATTCAAAATCAGGCCCAATTTGCTCGCTCGCTCGCTGGCACGGCGCAAGTTCTTGATACTGAAAAGGGTCGGC ATATTTCAAGTAATGGTTTTCGCCGCGATGTTGAAGTAATTTTGACCCTCGATGTGCAACGACCCGATGGCTCAAGTTAT CAAGCGCAAAGCGCGTGGATGGTTGAAGAGTTGCAGTTTGCGCGAATTGCGATTGGCAATACGATTCCAGTGCAGATCGA TGCTGATGACCCAATGGTGATTTATCCCAGCCGTGAGTTTCGCCATATCAAGTATTCACTGTGGTATACCAGTAATTATT TTTAA
Upstream 100 bases:
>100_bases CTTATCGCAAAGGTTTGGAGCAATGCCTCAAGCTTGAAGAACAAATTGGCATTCGCGGTGTTTTGGCAGCAATGCGCACC TTAGAATAGTTGGGGGAACG
Downstream 100 bases:
>100_bases TTGGCTAAAACCGCAATTAATAATGCAACCAAGGCTCCCGCTCCAGTGCTAATCAAATTAACCCAATCGTTGTTGAGCCA AGCTAGGCCGCGATAATGGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 214; Mature: 214
Protein sequence:
>214_residues MRLLVAAFLAFMLSTTGFFTFLPSAAKLTTPLVCNGGTIIPPASITRKSKFYCEKNGTQSLINPFLLLASGALVYTPLFY LALLLVKPKQTTLGGQQPKQPKPSKAVVDIQNQAQFARSLAGTAQVLDTEKGRHISSNGFRRDVEVILTLDVQRPDGSSY QAQSAWMVEELQFARIAIGNTIPVQIDADDPMVIYPSREFRHIKYSLWYTSNYF
Sequences:
>Translated_214_residues MRLLVAAFLAFMLSTTGFFTFLPSAAKLTTPLVCNGGTIIPPASITRKSKFYCEKNGTQSLINPFLLLASGALVYTPLFY LALLLVKPKQTTLGGQQPKQPKPSKAVVDIQNQAQFARSLAGTAQVLDTEKGRHISSNGFRRDVEVILTLDVQRPDGSSY QAQSAWMVEELQFARIAIGNTIPVQIDADDPMVIYPSREFRHIKYSLWYTSNYF >Mature_214_residues MRLLVAAFLAFMLSTTGFFTFLPSAAKLTTPLVCNGGTIIPPASITRKSKFYCEKNGTQSLINPFLLLASGALVYTPLFY LALLLVKPKQTTLGGQQPKQPKPSKAVVDIQNQAQFARSLAGTAQVLDTEKGRHISSNGFRRDVEVILTLDVQRPDGSSY QAQSAWMVEELQFARIAIGNTIPVQIDADDPMVIYPSREFRHIKYSLWYTSNYF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23756; Mature: 23756
Theoretical pI: Translated: 9.87; Mature: 9.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLLVAAFLAFMLSTTGFFTFLPSAAKLTTPLVCNGGTIIPPASITRKSKFYCEKNGTQS CHHHHHHHHHHHHHHCCHHHHCCCCHHHCCCEEECCCEECCCCCCCCCCCEEECCCCCHH LINPFLLLASGALVYTPLFYLALLLVKPKQTTLGGQQPKQPKPSKAVVDIQNQAQFARSL HHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHH AGTAQVLDTEKGRHISSNGFRRDVEVILTLDVQRPDGSSYQAQSAWMVEELQFARIAIGN HHHHHHHCCCCCCEECCCCCCEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHEEEECC TIPVQIDADDPMVIYPSREFRHIKYSLWYTSNYF EEEEEECCCCCEEEECCCCCEEEEEEEEEECCCC >Mature Secondary Structure MRLLVAAFLAFMLSTTGFFTFLPSAAKLTTPLVCNGGTIIPPASITRKSKFYCEKNGTQS CHHHHHHHHHHHHHHCCHHHHCCCCHHHCCCEEECCCEECCCCCCCCCCCEEECCCCCHH LINPFLLLASGALVYTPLFYLALLLVKPKQTTLGGQQPKQPKPSKAVVDIQNQAQFARSL HHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHH AGTAQVLDTEKGRHISSNGFRRDVEVILTLDVQRPDGSSYQAQSAWMVEELQFARIAIGN HHHHHHHCCCCCCEECCCCCCEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHEEEECC TIPVQIDADDPMVIYPSREFRHIKYSLWYTSNYF EEEEEECCCCCEEEECCCCCEEEEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA