Click here to switch to the map view.

The map label for this gene is yfkF [H]

Identifier: 159901311

GI number: 159901311

Start: 6116933

End: 6118150

Strand: Reverse

Name: yfkF [H]

Synonym: Haur_4799

Alternate gene names: 159901311

Gene position: 6118150-6116933 (Counterclockwise)

Preceding gene: 159901312

Following gene: 159901307

Centisome position: 96.4

GC content: 51.56

Gene sequence:

>1218_bases
ATGCAGCAGGTTCCTTCGACGCATGTGCGTCATCCAATGTGGCCAATTTATCTCTGCGTTGCGGTTACTGCCCTTGGAAT
TGGGATCATCAACCCGTTGATTCCGCATTTACTTGAGCAAAACGGCGCTAATGAATTTATTGTGGGCTTGAGCACCAGTG
TGATGTTTGCCAGCCTTGTGCTAACTGGCATGCCGATTGGCCGCACAATCGATAAATTTGGCATTCGACTATTTTTGATC
GTTGGCTTAATTTCCTACACCGTTGCTATGCTGGCAATGCCTTGGACGCATAGTATCCCGCTCTTTTTCATGTGGCGGAT
TTTCGAGGGGATTGGTTGGTCGTGTGTTTGGACTGCCGCTGAAACCTATGTCAGTCGGGTTAGTTCGCCTGCACAACGAG
GGCATAACACCGCCGTCTATGGCATGTCGCTGGCCAGTGGTACAGCAGCAGGTCCAATCATCGGCACAGCGGTTTATGAA
TGGACCAAAAACCCTGTCCATCCATTTTTGGTAGCAGTCGCGGCAGCGATTATCGCGACCGTGATTGTGGTCTTGGTTGT
GCCAGAACCGCATGTTCATCATACAGAGCAGGAAAGTGGTGGTGTCAGCTTTAAAATCACCCGCCCATTAATTTTGCCTT
TGGCGATTGCCTTCCTGTATGGTTATGGCACGTTGTCGCTGGTTTCATTGCTACCAACCCTCAATTATAGCAACTGGGAG
CTGGGTACGCTGATTTCGGTAACGGTCATTGCCAACATTGTGGCCCAAGTGCCAATTGGCCGAATGCTTGATCGCTATGG
CTATCGGCCATTACTAATTGGCTCGTTATCGCTCCTTTCGGCGGCAGCCTTGTTCTCGACCCTGCACCCACCGTTCTTGC
TAACCCTATTTCTCGGGATGTTGCTGGGCGCATTCGCTGGCACGCTCTATCCAATTGGGTTGGCTGTGTTAGCAGCGCGG
GTTCCACCAGCCAAATTGGGCGGTGCTAGCGGCATGTTTACGGTTTGCTATGGGCTTGGCAGTTTTGTTGGGCCTGCGCT
CACAGGCGGCGTAATGTCCATGGTTGGTGCGAAACATAGCGACCAAGCCTTGTTTGGCACGATTGGCTGTTTGGTGCTCG
CACTCTTGGGCTTAATGATGACCGGAATCGATCGGGTCAACGTCAAAGAGGAACATCCAGTTAGCGTAGCCTCAAGCGGC
ATCAAGCCACCAATGTAA

Upstream 100 bases:

>100_bases
ACCCAAATATCCAAGGCATCCAAACGATTGTTGATGAAGAAATCTCCGTAATTACCCAAACCTGGCCAACTGGGTTGCGG
GCAATAGCGTGAGGAGTATT

Downstream 100 bases:

>100_bases
ATATCAGGGTGGTTGATGCTTCAAAGGCTGGTAATACGCCAGCCTTTTTTGTTAGGCCAAAATAGCAAGGTTAAACAAAA
AACTCAGCACTGCTGCTGAG

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 405

Protein sequence:

>405_residues
MQQVPSTHVRHPMWPIYLCVAVTALGIGIINPLIPHLLEQNGANEFIVGLSTSVMFASLVLTGMPIGRTIDKFGIRLFLI
VGLISYTVAMLAMPWTHSIPLFFMWRIFEGIGWSCVWTAAETYVSRVSSPAQRGHNTAVYGMSLASGTAAGPIIGTAVYE
WTKNPVHPFLVAVAAAIIATVIVVLVVPEPHVHHTEQESGGVSFKITRPLILPLAIAFLYGYGTLSLVSLLPTLNYSNWE
LGTLISVTVIANIVAQVPIGRMLDRYGYRPLLIGSLSLLSAAALFSTLHPPFLLTLFLGMLLGAFAGTLYPIGLAVLAAR
VPPAKLGGASGMFTVCYGLGSFVGPALTGGVMSMVGAKHSDQALFGTIGCLVLALLGLMMTGIDRVNVKEEHPVSVASSG
IKPPM

Sequences:

>Translated_405_residues
MQQVPSTHVRHPMWPIYLCVAVTALGIGIINPLIPHLLEQNGANEFIVGLSTSVMFASLVLTGMPIGRTIDKFGIRLFLI
VGLISYTVAMLAMPWTHSIPLFFMWRIFEGIGWSCVWTAAETYVSRVSSPAQRGHNTAVYGMSLASGTAAGPIIGTAVYE
WTKNPVHPFLVAVAAAIIATVIVVLVVPEPHVHHTEQESGGVSFKITRPLILPLAIAFLYGYGTLSLVSLLPTLNYSNWE
LGTLISVTVIANIVAQVPIGRMLDRYGYRPLLIGSLSLLSAAALFSTLHPPFLLTLFLGMLLGAFAGTLYPIGLAVLAAR
VPPAKLGGASGMFTVCYGLGSFVGPALTGGVMSMVGAKHSDQALFGTIGCLVLALLGLMMTGIDRVNVKEEHPVSVASSG
IKPPM
>Mature_405_residues
MQQVPSTHVRHPMWPIYLCVAVTALGIGIINPLIPHLLEQNGANEFIVGLSTSVMFASLVLTGMPIGRTIDKFGIRLFLI
VGLISYTVAMLAMPWTHSIPLFFMWRIFEGIGWSCVWTAAETYVSRVSSPAQRGHNTAVYGMSLASGTAAGPIIGTAVYE
WTKNPVHPFLVAVAAAIIATVIVVLVVPEPHVHHTEQESGGVSFKITRPLILPLAIAFLYGYGTLSLVSLLPTLNYSNWE
LGTLISVTVIANIVAQVPIGRMLDRYGYRPLLIGSLSLLSAAALFSTLHPPFLLTLFLGMLLGAFAGTLYPIGLAVLAAR
VPPAKLGGASGMFTVCYGLGSFVGPALTGGVMSMVGAKHSDQALFGTIGCLVLALLGLMMTGIDRVNVKEEHPVSVASSG
IKPPM

Specific function: Unknown

COG id: COG0477

COG function: function code GEPR; Permeases of the major facilitator superfamily

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=351, Percent_Identity=24.7863247863248, Blast_Score=75, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 43001; Mature: 43001

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQVPSTHVRHPMWPIYLCVAVTALGIGIINPLIPHLLEQNGANEFIVGLSTSVMFASLV
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHH
LTGMPIGRTIDKFGIRLFLIVGLISYTVAMLAMPWTHSIPLFFMWRIFEGIGWSCVWTAA
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHH
ETYVSRVSSPAQRGHNTAVYGMSLASGTAAGPIIGTAVYEWTKNPVHPFLVAVAAAIIAT
HHHHHHHCCHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
VIVVLVVPEPHVHHTEQESGGVSFKITRPLILPLAIAFLYGYGTLSLVSLLPTLNYSNWE
HHHHHCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
LGTLISVTVIANIVAQVPIGRMLDRYGYRPLLIGSLSLLSAAALFSTLHPPFLLTLFLGM
HHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
LLGAFAGTLYPIGLAVLAARVPPAKLGGASGMFTVCYGLGSFVGPALTGGVMSMVGAKHS
HHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DQALFGTIGCLVLALLGLMMTGIDRVNVKEEHPVSVASSGIKPPM
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCC
>Mature Secondary Structure
MQQVPSTHVRHPMWPIYLCVAVTALGIGIINPLIPHLLEQNGANEFIVGLSTSVMFASLV
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHH
LTGMPIGRTIDKFGIRLFLIVGLISYTVAMLAMPWTHSIPLFFMWRIFEGIGWSCVWTAA
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHH
ETYVSRVSSPAQRGHNTAVYGMSLASGTAAGPIIGTAVYEWTKNPVHPFLVAVAAAIIAT
HHHHHHHCCHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
VIVVLVVPEPHVHHTEQESGGVSFKITRPLILPLAIAFLYGYGTLSLVSLLPTLNYSNWE
HHHHHCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
LGTLISVTVIANIVAQVPIGRMLDRYGYRPLLIGSLSLLSAAALFSTLHPPFLLTLFLGM
HHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
LLGAFAGTLYPIGLAVLAARVPPAKLGGASGMFTVCYGLGSFVGPALTGGVMSMVGAKHS
HHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DQALFGTIGCLVLALLGLMMTGIDRVNVKEEHPVSVASSGIKPPM
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]