| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is alr2 [H]
Identifier: 159901277
GI number: 159901277
Start: 6072036
End: 6074591
Strand: Reverse
Name: alr2 [H]
Synonym: Haur_4765
Alternate gene names: 159901277
Gene position: 6074591-6072036 (Counterclockwise)
Preceding gene: 159901278
Following gene: 159901272
Centisome position: 95.71
GC content: 54.15
Gene sequence:
>2556_bases ATGATTCACGTTGCTGATTTAATCGCTGCTGGAGCGCATATCGCCCAAGCTGGCGACCACATACAATGGTCAGGCTGGGC CTATGACTCACGCCTAGCCCAAACTGGTAATTTGTTTATTGCGCTCCAAACAGCGCGGGCCGATGGCCATGGTTTTATTC GCGATGCAATTGCCGCTGGCGCAACCGGAGTGGTCTGTCAATATGCACCTAGTGTCATTCCTGCATCGATTACCGTGATA ATTTGTAACGATCCTTTAATCTTATTGCGCAGTTGGGCCAAAGCTCAGTTTGCCAAACACGCGCCACGCACGGTAGCAAT TACTGGCAGCGTTGGCAAAACCTCAACCAAACGAGCGATTGCCCAGGTGTTGGCAAGCCGCTACTCGGTGTTGCGTAGCC CACGTTCGTTCAATGCCGATTTAGGCTTATCGGTGACCATGGCCGAGCTTGCGGCTCAGCAATGGGCAGTTTTAGAGTTT GGGGCTGATCACCCAGGCGAAATTGCCCAGTTGTGCCAGCTTTTCCCCCCCGAGATTGGGATTGTCACCAATGTTGGTTC GGCTCATTTGGGGGCATTTGGCTCACAAGCCGCGATTGCCCACGAAAAAGCCGCGATTATTCAACAGTTACCCGCCCACG GTTACGCAATCTTGAATGGCGACGATCCTCTTGTGGCTGCAATGGCTGAACGAACGCACGCTCGCCTTCTGCGGGTTGGG CAGAATGCAGCGTGTGAGATTCGTTGGGGCAATGTGACCAGCACCGTTCAGTCAACCCAATTCACTATCCACATACCTGA ACATGCCCCTGAATGTATTCAACTCTTAGCAAGTGGCGTGCCAAGTGTTCAGGCCGCCGCTTTTGCAATTGCCGTGGGCT ATGTTGCTGGCTTGAGTTTGGCCGAGATGCGCGAAGCCTTGGCTGATTTGCGCCCAGCCCATGGCCGTTTTAATCCGTTG GTTGGGCGTAATGGCGCGACGATTATTGATGATACCTTTAATGCTGCGCCCGAATCGGTGTATGCAGCCCTGCAAACGCT TGGTTCGTTGCCCGCCCGCCGCCGGATTGCGATCCTCGGCGATATGGCTGAATTAGGCGCTGCTAGTGCTCGCTTTCATC AACAAGCGGGCCAAATTGCTGCCCAACATGCCGATTTACTGATTACTAAAGGCGACCAAGCAGCGCTTGCTGCTACCAGT GCCCGTGAAGCAAGCGCAACTTACGGTTATCAAATTAACACCATGAGCGTGCATAGTGCGGCGGCGGTGTTGGCGGCTGT CCCAACCGATCTTGGTGCAGGCGATTTGGTGTTGGTCAAGGGGGCGGCTGAATCGCGAATGGAACATGTCGTCGCAGGCT TGTTGGCTCCTGAAGCTGATCCACGGCAGGTGTTGGTGCGCCAAGAGCATGTTTGGCGCACTGTACGCATTGGCCTGCCC GATCGGCCCACAACGGTGCGAATTGATCTTGATGCTTTGGCGAGCAATGTGCAAGCTATTCGGCAGGCCGTCGGCGTACC TGTAATGGCAGTGCTCAAAGCCGATGCCTATGGCCATGGTGCAGTTCGTTCAGCTCGCACCGTTTTATTAAATGGGGCAA GCTCGTTGGCGGTAGCAACTTTAGGCGAAGCCCTGCACTTGCGCCAAGCTGATATTGCCGCGCCAATCTTGATTTTGGGC TATACCCCAACCTGGCAAATGCGCGAAGCATTGCTCAATCGGATCAGCGTAGCATTATTTGATCGCCATGTCGCTCAATC GTTGCATGAACAGGCCTTGGCTTTGGGATTGAAAGCCCAAGTACACATCAAAATTGATACAGGCATGGCACGATTGGGCT TGGCAGTTGAGCAAGCGGTGGATTTTATCGAATGGTTGCAAGGCTTGGCGGGCATCGAAGTTGTCGGCATTTTCACCCAT TTTGCCAACGCCGATGAGGCTGATGCAAGCTTTTTTGGCTTGCAACTGCAACGTTTTCAAACGCTGCTTGATCAATTAAC CCAGCGTGGATTACGACCGCCAGTGGTGCATGCCGCTAATAGTGCTGCGGCCATGGTGCATCCAAGTGCTCGCTATGATA TGGTGAGAGCGGGGATTGCCTTGTATGGCATCGACCCAAGCAGCGATGTACATTTGAATCTCCAGCCAGTTTTGGAATTC CAGACTGAGGTAGCTCAAGTGCGTGAGTTGCCAGCAGGCAGCCCAATTTCATATGGCTGTACCTTTGTCACCAGCCGCAT CTCGCGGATTGCCACAATTCCGGTGGGCTATGCCGATGGATTTCGGCGTGCGCCCCAGCCTTGGCGCGAAGTGCTGATTC ATGGTCAGCGCGTGCCAGTCGTCGGGCGGGTGTGTATGGATTATGCCATGATCGATGTAACTGAGCTTGATTCTGTGCAA CGCGGCGATCAGGTGGTACTGATCGGGCAACAGGGCACAGATCGAATTCGCGCTGAGGAAGTGGCTGAGTGGTTGGGCAC GAATGCCTATGAAGTGGTTTCGGCAATCTTGCCACGCGTGCCCCGTGAGCCAGTCGAGCATTTTGCCGAGCGCTAA
Upstream 100 bases:
>100_bases TATAATGCATCCCCATAAGTAGGGAAGCCATGTGGGATAGCATGGTGTAGATCGCAGGCCTAACATGCTCGATTAGGCTT GGTAAGTTGGTAGGAATTAA
Downstream 100 bases:
>100_bases ACGAGGGGTCAGGGATAGAGATCGTTAACCACGAAGGACACGAAGCGCACGAAGGTTGGATATATCGTCCTATTCCGTTT AGCGGCAACTCAAACATACC
Product: alanine racemase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 851; Mature: 851
Protein sequence:
>851_residues MIHVADLIAAGAHIAQAGDHIQWSGWAYDSRLAQTGNLFIALQTARADGHGFIRDAIAAGATGVVCQYAPSVIPASITVI ICNDPLILLRSWAKAQFAKHAPRTVAITGSVGKTSTKRAIAQVLASRYSVLRSPRSFNADLGLSVTMAELAAQQWAVLEF GADHPGEIAQLCQLFPPEIGIVTNVGSAHLGAFGSQAAIAHEKAAIIQQLPAHGYAILNGDDPLVAAMAERTHARLLRVG QNAACEIRWGNVTSTVQSTQFTIHIPEHAPECIQLLASGVPSVQAAAFAIAVGYVAGLSLAEMREALADLRPAHGRFNPL VGRNGATIIDDTFNAAPESVYAALQTLGSLPARRRIAILGDMAELGAASARFHQQAGQIAAQHADLLITKGDQAALAATS AREASATYGYQINTMSVHSAAAVLAAVPTDLGAGDLVLVKGAAESRMEHVVAGLLAPEADPRQVLVRQEHVWRTVRIGLP DRPTTVRIDLDALASNVQAIRQAVGVPVMAVLKADAYGHGAVRSARTVLLNGASSLAVATLGEALHLRQADIAAPILILG YTPTWQMREALLNRISVALFDRHVAQSLHEQALALGLKAQVHIKIDTGMARLGLAVEQAVDFIEWLQGLAGIEVVGIFTH FANADEADASFFGLQLQRFQTLLDQLTQRGLRPPVVHAANSAAAMVHPSARYDMVRAGIALYGIDPSSDVHLNLQPVLEF QTEVAQVRELPAGSPISYGCTFVTSRISRIATIPVGYADGFRRAPQPWREVLIHGQRVPVVGRVCMDYAMIDVTELDSVQ RGDQVVLIGQQGTDRIRAEEVAEWLGTNAYEVVSAILPRVPREPVEHFAER
Sequences:
>Translated_851_residues MIHVADLIAAGAHIAQAGDHIQWSGWAYDSRLAQTGNLFIALQTARADGHGFIRDAIAAGATGVVCQYAPSVIPASITVI ICNDPLILLRSWAKAQFAKHAPRTVAITGSVGKTSTKRAIAQVLASRYSVLRSPRSFNADLGLSVTMAELAAQQWAVLEF GADHPGEIAQLCQLFPPEIGIVTNVGSAHLGAFGSQAAIAHEKAAIIQQLPAHGYAILNGDDPLVAAMAERTHARLLRVG QNAACEIRWGNVTSTVQSTQFTIHIPEHAPECIQLLASGVPSVQAAAFAIAVGYVAGLSLAEMREALADLRPAHGRFNPL VGRNGATIIDDTFNAAPESVYAALQTLGSLPARRRIAILGDMAELGAASARFHQQAGQIAAQHADLLITKGDQAALAATS AREASATYGYQINTMSVHSAAAVLAAVPTDLGAGDLVLVKGAAESRMEHVVAGLLAPEADPRQVLVRQEHVWRTVRIGLP DRPTTVRIDLDALASNVQAIRQAVGVPVMAVLKADAYGHGAVRSARTVLLNGASSLAVATLGEALHLRQADIAAPILILG YTPTWQMREALLNRISVALFDRHVAQSLHEQALALGLKAQVHIKIDTGMARLGLAVEQAVDFIEWLQGLAGIEVVGIFTH FANADEADASFFGLQLQRFQTLLDQLTQRGLRPPVVHAANSAAAMVHPSARYDMVRAGIALYGIDPSSDVHLNLQPVLEF QTEVAQVRELPAGSPISYGCTFVTSRISRIATIPVGYADGFRRAPQPWREVLIHGQRVPVVGRVCMDYAMIDVTELDSVQ RGDQVVLIGQQGTDRIRAEEVAEWLGTNAYEVVSAILPRVPREPVEHFAER >Mature_851_residues MIHVADLIAAGAHIAQAGDHIQWSGWAYDSRLAQTGNLFIALQTARADGHGFIRDAIAAGATGVVCQYAPSVIPASITVI ICNDPLILLRSWAKAQFAKHAPRTVAITGSVGKTSTKRAIAQVLASRYSVLRSPRSFNADLGLSVTMAELAAQQWAVLEF GADHPGEIAQLCQLFPPEIGIVTNVGSAHLGAFGSQAAIAHEKAAIIQQLPAHGYAILNGDDPLVAAMAERTHARLLRVG QNAACEIRWGNVTSTVQSTQFTIHIPEHAPECIQLLASGVPSVQAAAFAIAVGYVAGLSLAEMREALADLRPAHGRFNPL VGRNGATIIDDTFNAAPESVYAALQTLGSLPARRRIAILGDMAELGAASARFHQQAGQIAAQHADLLITKGDQAALAATS AREASATYGYQINTMSVHSAAAVLAAVPTDLGAGDLVLVKGAAESRMEHVVAGLLAPEADPRQVLVRQEHVWRTVRIGLP DRPTTVRIDLDALASNVQAIRQAVGVPVMAVLKADAYGHGAVRSARTVLLNGASSLAVATLGEALHLRQADIAAPILILG YTPTWQMREALLNRISVALFDRHVAQSLHEQALALGLKAQVHIKIDTGMARLGLAVEQAVDFIEWLQGLAGIEVVGIFTH FANADEADASFFGLQLQRFQTLLDQLTQRGLRPPVVHAANSAAAMVHPSARYDMVRAGIALYGIDPSSDVHLNLQPVLEF QTEVAQVRELPAGSPISYGCTFVTSRISRIATIPVGYADGFRRAPQPWREVLIHGQRVPVVGRVCMDYAMIDVTELDSVQ RGDQVVLIGQQGTDRIRAEEVAEWLGTNAYEVVSAILPRVPREPVEHFAER
Specific function: Provides the D-alanine required for cell wall biosynthesis [H]
COG id: COG0787
COG function: function code M; Alanine racemase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the alanine racemase family [H]
Homologues:
Organism=Escherichia coli, GI1790487, Length=363, Percent_Identity=34.7107438016529, Blast_Score=181, Evalue=2e-46, Organism=Escherichia coli, GI1787439, Length=373, Percent_Identity=30.2949061662198, Blast_Score=152, Evalue=7e-38, Organism=Escherichia coli, GI1786274, Length=433, Percent_Identity=31.4087759815243, Blast_Score=152, Evalue=1e-37,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000821 - InterPro: IPR009006 - InterPro: IPR011079 - InterPro: IPR001608 - InterPro: IPR020622 [H]
Pfam domain/function: PF00842 Ala_racemase_C; PF01168 Ala_racemase_N [H]
EC number: =5.1.1.1 [H]
Molecular weight: Translated: 90685; Mature: 90685
Theoretical pI: Translated: 6.78; Mature: 6.78
Prosite motif: PS00395 ALANINE_RACEMASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIHVADLIAAGAHIAQAGDHIQWSGWAYDSRLAQTGNLFIALQTARADGHGFIRDAIAAG CEEHHHHHHHCHHHHHCCCCEEECCEECHHHHHCCCCEEEEEEECCCCCCHHHHHHHHCC ATGVVCQYAPSVIPASITVIICNDPLILLRSWAKAQFAKHAPRTVAITGSVGKTSTKRAI CCCCCHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHH AQVLASRYSVLRSPRSFNADLGLSVTMAELAAQQWAVLEFGADHPGEIAQLCQLFPPEIG HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHEEEEEECCCCCHHHHHHHHHCCCCCC IVTNVGSAHLGAFGSQAAIAHEKAAIIQQLPAHGYAILNGDDPLVAAMAERTHARLLRVG EEECCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHCC QNAACEIRWGNVTSTVQSTQFTIHIPEHAPECIQLLASGVPSVQAAAFAIAVGYVAGLSL CCCEEEEEECCEECCEECCEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCH AEMREALADLRPAHGRFNPLVGRNGATIIDDTFNAAPESVYAALQTLGSLPARRRIAILG HHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEE DMAELGAASARFHQQAGQIAAQHADLLITKGDQAALAATSAREASATYGYQINTMSVHSA CHHHHCHHHHHHHHHHHHHHHHCCCEEEECCCCHHEEECCCHHCCCCCCEEEEEEEHHHH AAVLAAVPTDLGAGDLVLVKGAAESRMEHVVAGLLAPEADPRQVLVRQEHVWRTVRIGLP HHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCEEEEEECCC DRPTTVRIDLDALASNVQAIRQAVGVPVMAVLKADAYGHGAVRSARTVLLNGASSLAVAT CCCCEEEEEHHHHHHHHHHHHHHHCCCEEEHHCCCCCCCCHHHHHHEEEEECCCHHHHHH LGEALHLRQADIAAPILILGYTPTWQMREALLNRISVALFDRHVAQSLHEQALALGLKAQ HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEE VHIKIDTGMARLGLAVEQAVDFIEWLQGLAGIEVVGIFTHFANADEADASFFGLQLQRFQ EEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHCCCCCCCHHHHHHHHHHHH TLLDQLTQRGLRPPVVHAANSAAAMVHPSARYDMVRAGIALYGIDPSSDVHLNLQPVLEF HHHHHHHHCCCCCCEEECCCCCEEEECCCHHHHHHHCCEEEEECCCCCCEEEEHHHHHHH QTEVAQVRELPAGSPISYGCTFVTSRISRIATIPVGYADGFRRAPQPWREVLIHGQRVPV HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHCCCCCCH VGRVCMDYAMIDVTELDSVQRGDQVVLIGQQGTDRIRAEEVAEWLGTNAYEVVSAILPRV HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHCCC PREPVEHFAER CCCHHHHHHCC >Mature Secondary Structure MIHVADLIAAGAHIAQAGDHIQWSGWAYDSRLAQTGNLFIALQTARADGHGFIRDAIAAG CEEHHHHHHHCHHHHHCCCCEEECCEECHHHHHCCCCEEEEEEECCCCCCHHHHHHHHCC ATGVVCQYAPSVIPASITVIICNDPLILLRSWAKAQFAKHAPRTVAITGSVGKTSTKRAI CCCCCHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHH AQVLASRYSVLRSPRSFNADLGLSVTMAELAAQQWAVLEFGADHPGEIAQLCQLFPPEIG HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHEEEEEECCCCCHHHHHHHHHCCCCCC IVTNVGSAHLGAFGSQAAIAHEKAAIIQQLPAHGYAILNGDDPLVAAMAERTHARLLRVG EEECCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHCC QNAACEIRWGNVTSTVQSTQFTIHIPEHAPECIQLLASGVPSVQAAAFAIAVGYVAGLSL CCCEEEEEECCEECCEECCEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCH AEMREALADLRPAHGRFNPLVGRNGATIIDDTFNAAPESVYAALQTLGSLPARRRIAILG HHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEE DMAELGAASARFHQQAGQIAAQHADLLITKGDQAALAATSAREASATYGYQINTMSVHSA CHHHHCHHHHHHHHHHHHHHHHCCCEEEECCCCHHEEECCCHHCCCCCCEEEEEEEHHHH AAVLAAVPTDLGAGDLVLVKGAAESRMEHVVAGLLAPEADPRQVLVRQEHVWRTVRIGLP HHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCEEEEEECCC DRPTTVRIDLDALASNVQAIRQAVGVPVMAVLKADAYGHGAVRSARTVLLNGASSLAVAT CCCCEEEEEHHHHHHHHHHHHHHHCCCEEEHHCCCCCCCCHHHHHHEEEEECCCHHHHHH LGEALHLRQADIAAPILILGYTPTWQMREALLNRISVALFDRHVAQSLHEQALALGLKAQ HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEE VHIKIDTGMARLGLAVEQAVDFIEWLQGLAGIEVVGIFTHFANADEADASFFGLQLQRFQ EEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHCCCCCCCHHHHHHHHHHHH TLLDQLTQRGLRPPVVHAANSAAAMVHPSARYDMVRAGIALYGIDPSSDVHLNLQPVLEF HHHHHHHHCCCCCCEEECCCCCEEEECCCHHHHHHHCCEEEEECCCCCCEEEEHHHHHHH QTEVAQVRELPAGSPISYGCTFVTSRISRIATIPVGYADGFRRAPQPWREVLIHGQRVPV HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHCCCCCCH VGRVCMDYAMIDVTELDSVQRGDQVVLIGQQGTDRIRAEEVAEWLGTNAYEVVSAILPRV HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHCCC PREPVEHFAER CCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11997336 [H]