| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159901255
Identifier: 159901255
GI number: 159901255
Start: 6051861
End: 6053297
Strand: Direct
Name: 159901255
Synonym: Haur_4743
Alternate gene names: NA
Gene position: 6051861-6053297 (Clockwise)
Preceding gene: 159901254
Following gene: 159901256
Centisome position: 95.36
GC content: 53.51
Gene sequence:
>1437_bases ATGGAAAAGCCCACGACTGACCAACCAACCGATCTCTGCATCATTATGCATGCCCATGCGCCGTTTGTGCGCCAACCTGG GCCATCCAGCCATGGCGAAGAAGAGTTACATGGCCTGATGGCCGATTGTTATATTCCGCTTTTACGCGGCCTCGCCGACT TGATCGAGCAAAATAAAGCGGTCAAAATGGGCTTGGCCATCAGCCCAATTCTGTTGCATCAATTGAATGATCCAGTTGTG CAAAAGCATATGCTGCATCATCTCGATGAGGCGATTGTTCAGGCCGAGCGGCGGCTTGAAGCAACCAAGGCCGATGAGCA CGCAGCCTATCTAGCCCAATTTTATTTACAACTGCATCAACGCACCTTACATGTCTTTGAAAAGCAGTGGAGCCGTAATG TTGTAGCCATGACCCGTGAGTTGGTCGAGGCTGAGGCCTTGGAAGTGCTGGGCCATACGGCAACCTATCCCGTACCACAT TTATACGATCGCCCGACTTTGCGCACCCAAGTCGAAATTGGCACGATCGCGCTGATGCATTTGCTCGGCCAAACTCCAAG CGTCTTGTGGAGCGCCGAAGATCCAGTTTCGCCAGAGTGGGAGCAGATTCTCAAGCCTTTGGATATGCGGGCCTTGGTCG GGACTGCCAACCCTGAGTTACGCGGACAAGCCCTTTCGTGGCTTTCCGAAGCTCGTCAAACCGCTGTGATTACGCCCGAT CAGCGCTTGCTGACGCATATTCGCTCGGTTGGCTTGGGCTATCCTGGCGATCCGCTATATCGTGCGCCGATGGAAATTCC CATGGATGATGGCATGCTGAGTCGTGATGGCAGCGCCTATGATCCATTTTATGCCTATGCGCGGGCGCGGATGCATGCCC GTCACTTCACCGCTGTGCTTAGCGAAACCGCCAGCAACGGCCAGCCCTTAGTGATTGTGGCTGATATGGAATTATTTGGT AGCGGCTGGTTTGAGGGTGGTTTATGGCTGCGCACGTTGCTCGAAGAATTGCCCAGTCATTTTCGCTTGGTTACGCCTAG CACCCTGCTCAAACGCCATAAACCTAGCGTGGTTGTGCCGCCACAGCATTTCGCTGGAATTATCGATGGCCGTTTGAGCG CGGCCCATCGCCAATTACAAGCGGCGGTAGCGCAATATCCCCAAGCTTATGGCGACCGCGAACAGGTGCTCAACCAAGCT GCCCGTGAATTTTTGCTGGCACAATCAGGCGATTGGGATCGCTGGGTTGGTACGCCTGGCGCAGATTATGCCAATGCTCG GCGCAGCGAACACCTGCAAAAATTCGATTGGCTGATGCAGTTATTGCCGCATGAAACCTTGTTACCAGTTGCCGCCCGTG AATTTGCCGCCTTGCAAGAGCGCGATAATCCTTTTCCAACCCTGAATTATCGTTTGTTTGGGAATTTTGAACGATGA
Upstream 100 bases:
>100_bases ACCGAAATGGTGAGCCACGAACGGGTATTACGGAAGTTAGCGCTGCCAGAAGCAATGCCAGTGGGGAAAGCCAAACGACG GGGAGGGCGACGCAAATCAT
Downstream 100 bases:
>100_bases CAACCTACACTTGGCTTGGCCACGACCGGCCACATCTTGATACCTTGTTCGTTCAAGACCTCGGGGCGATGGTTTTCGCC AGTTTTGGCGGGGTGGTCGC
Product: hypothetical protein
Products: NA
Alternate protein names: Glycoside Hydrolase Family; Glycosyl Hydrolase Family; Glycosy Hydrolase Family Protein; Family; (1-_4)-Alpha-D-Glucan Branching; Glycosyl Transferase/Glycoside Hydrolase-Like Protein; Glycosyl Hydrolase Family Protein
Number of amino acids: Translated: 478; Mature: 478
Protein sequence:
>478_residues MEKPTTDQPTDLCIIMHAHAPFVRQPGPSSHGEEELHGLMADCYIPLLRGLADLIEQNKAVKMGLAISPILLHQLNDPVV QKHMLHHLDEAIVQAERRLEATKADEHAAYLAQFYLQLHQRTLHVFEKQWSRNVVAMTRELVEAEALEVLGHTATYPVPH LYDRPTLRTQVEIGTIALMHLLGQTPSVLWSAEDPVSPEWEQILKPLDMRALVGTANPELRGQALSWLSEARQTAVITPD QRLLTHIRSVGLGYPGDPLYRAPMEIPMDDGMLSRDGSAYDPFYAYARARMHARHFTAVLSETASNGQPLVIVADMELFG SGWFEGGLWLRTLLEELPSHFRLVTPSTLLKRHKPSVVVPPQHFAGIIDGRLSAAHRQLQAAVAQYPQAYGDREQVLNQA AREFLLAQSGDWDRWVGTPGADYANARRSEHLQKFDWLMQLLPHETLLPVAAREFAALQERDNPFPTLNYRLFGNFER
Sequences:
>Translated_478_residues MEKPTTDQPTDLCIIMHAHAPFVRQPGPSSHGEEELHGLMADCYIPLLRGLADLIEQNKAVKMGLAISPILLHQLNDPVV QKHMLHHLDEAIVQAERRLEATKADEHAAYLAQFYLQLHQRTLHVFEKQWSRNVVAMTRELVEAEALEVLGHTATYPVPH LYDRPTLRTQVEIGTIALMHLLGQTPSVLWSAEDPVSPEWEQILKPLDMRALVGTANPELRGQALSWLSEARQTAVITPD QRLLTHIRSVGLGYPGDPLYRAPMEIPMDDGMLSRDGSAYDPFYAYARARMHARHFTAVLSETASNGQPLVIVADMELFG SGWFEGGLWLRTLLEELPSHFRLVTPSTLLKRHKPSVVVPPQHFAGIIDGRLSAAHRQLQAAVAQYPQAYGDREQVLNQA AREFLLAQSGDWDRWVGTPGADYANARRSEHLQKFDWLMQLLPHETLLPVAAREFAALQERDNPFPTLNYRLFGNFER >Mature_478_residues MEKPTTDQPTDLCIIMHAHAPFVRQPGPSSHGEEELHGLMADCYIPLLRGLADLIEQNKAVKMGLAISPILLHQLNDPVV QKHMLHHLDEAIVQAERRLEATKADEHAAYLAQFYLQLHQRTLHVFEKQWSRNVVAMTRELVEAEALEVLGHTATYPVPH LYDRPTLRTQVEIGTIALMHLLGQTPSVLWSAEDPVSPEWEQILKPLDMRALVGTANPELRGQALSWLSEARQTAVITPD QRLLTHIRSVGLGYPGDPLYRAPMEIPMDDGMLSRDGSAYDPFYAYARARMHARHFTAVLSETASNGQPLVIVADMELFG SGWFEGGLWLRTLLEELPSHFRLVTPSTLLKRHKPSVVVPPQHFAGIIDGRLSAAHRQLQAAVAQYPQAYGDREQVLNQA AREFLLAQSGDWDRWVGTPGADYANARRSEHLQKFDWLMQLLPHETLLPVAAREFAALQERDNPFPTLNYRLFGNFER
Specific function: Unknown
COG id: COG1543
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53938; Mature: 53938
Theoretical pI: Translated: 6.33; Mature: 6.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEKPTTDQPTDLCIIMHAHAPFVRQPGPSSHGEEELHGLMADCYIPLLRGLADLIEQNKA CCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC VKMGLAISPILLHQLNDPVVQKHMLHHLDEAIVQAERRLEATKADEHAAYLAQFYLQLHQ EEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RTLHVFEKQWSRNVVAMTRELVEAEALEVLGHTATYPVPHLYDRPTLRTQVEIGTIALMH HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEHHHHHHHHHH LLGQTPSVLWSAEDPVSPEWEQILKPLDMRALVGTANPELRGQALSWLSEARQTAVITPD HHCCCCCEEECCCCCCCCCHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEECCCC QRLLTHIRSVGLGYPGDPLYRAPMEIPMDDGMLSRDGSAYDPFYAYARARMHARHFTAVL HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH SETASNGQPLVIVADMELFGSGWFEGGLWLRTLLEELPSHFRLVTPSTLLKRHKPSVVVP HHHCCCCCCEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHEEECCHHHHHHCCCCCEEEC PQHFAGIIDGRLSAAHRQLQAAVAQYPQAYGDREQVLNQAAREFLLAQSGDWDRWVGTPG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC ADYANARRSEHLQKFDWLMQLLPHETLLPVAAREFAALQERDNPFPTLNYRLFGNFER CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC >Mature Secondary Structure MEKPTTDQPTDLCIIMHAHAPFVRQPGPSSHGEEELHGLMADCYIPLLRGLADLIEQNKA CCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC VKMGLAISPILLHQLNDPVVQKHMLHHLDEAIVQAERRLEATKADEHAAYLAQFYLQLHQ EEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RTLHVFEKQWSRNVVAMTRELVEAEALEVLGHTATYPVPHLYDRPTLRTQVEIGTIALMH HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEHHHHHHHHHH LLGQTPSVLWSAEDPVSPEWEQILKPLDMRALVGTANPELRGQALSWLSEARQTAVITPD HHCCCCCEEECCCCCCCCCHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEECCCC QRLLTHIRSVGLGYPGDPLYRAPMEIPMDDGMLSRDGSAYDPFYAYARARMHARHFTAVL HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH SETASNGQPLVIVADMELFGSGWFEGGLWLRTLLEELPSHFRLVTPSTLLKRHKPSVVVP HHHCCCCCCEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHEEECCHHHHHHCCCCCEEEC PQHFAGIIDGRLSAAHRQLQAAVAQYPQAYGDREQVLNQAAREFLLAQSGDWDRWVGTPG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC ADYANARRSEHLQKFDWLMQLLPHETLLPVAAREFAALQERDNPFPTLNYRLFGNFER CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA