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The map label for this gene is 159901192

Identifier: 159901192

GI number: 159901192

Start: 5977424

End: 5978035

Strand: Reverse

Name: 159901192

Synonym: Haur_4680

Alternate gene names: NA

Gene position: 5978035-5977424 (Counterclockwise)

Preceding gene: 159901193

Following gene: 159901191

Centisome position: 94.19

GC content: 56.86

Gene sequence:

>612_bases
ATGTCAACCCGTTTACGTCGCGGTTTGGAGTTTGGCCTTGGCCTGATTATCTTAATCGGCTTGATTTGGTTCAACAATCT
GCCCAGCAGCGATCAACCAACGCCCAGCCCAAATCCTAGTGCAACTATCGAAATCAGTTCGCGGGGTTTGCCATCGAGCA
CGCCACAACAAGCGACCAGCCGACCACGCCAGACTGCCGTGGCAACCGCCAAACCAACCACGCGGCCACGCCAGACGGTC
ATGCCGACTGCCAAACCAACCACGCGGCCACGCCCAAGCCCGACGGTTGCGCCGACCGCCCGCGCTACGCGCACGCCTGA
GCGCGATTCGGCTGGATTGCGCTATGTGGCGTTTGGCGATTTGCCAATTCAAGCCCAAGCTACAATTCGCTTGATCGAGC
AGGGCGGGCCGTTTCCCTATAGCAAAGATGGGGCAATTTTCAACAATCGTGAGCAAATTTTGCCGAGCAAACCACGCGGC
TACTATCGCGAATACACCGTCGAAACGCCTGGCTCAGCCGATCGCGGGGCACGCCGAATTGTGGCTGGCGATAATGGCGA
GTTGTATTACACCGATGATCATTATGCAAGTTTTCGGAGAGTACGCCAATGA

Upstream 100 bases:

>100_bases
GCTTGTGAAGCAGTAGGCATCAAGCCCTAAACGACAATCAGCATCACACTACAACACCCGATCTGCCTGTGCGGTCGGGT
GTTTTTGCGAGGAAATAGCA

Downstream 100 bases:

>100_bases
AATTGAACAATCTGGCTCGTGATCCCGCTCAATCAGGTTTATATCGGGTGCAAGCTTCGCATATTGGCCGTTTGTTGATG
GGCGTGCAACACCATCAACT

Product: guanine-specific ribonuclease N1 and T1

Products: NA

Alternate protein names: RNase St [H]

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MSTRLRRGLEFGLGLIILIGLIWFNNLPSSDQPTPSPNPSATIEISSRGLPSSTPQQATSRPRQTAVATAKPTTRPRQTV
MPTAKPTTRPRPSPTVAPTARATRTPERDSAGLRYVAFGDLPIQAQATIRLIEQGGPFPYSKDGAIFNNREQILPSKPRG
YYREYTVETPGSADRGARRIVAGDNGELYYTDDHYASFRRVRQ

Sequences:

>Translated_203_residues
MSTRLRRGLEFGLGLIILIGLIWFNNLPSSDQPTPSPNPSATIEISSRGLPSSTPQQATSRPRQTAVATAKPTTRPRQTV
MPTAKPTTRPRPSPTVAPTARATRTPERDSAGLRYVAFGDLPIQAQATIRLIEQGGPFPYSKDGAIFNNREQILPSKPRG
YYREYTVETPGSADRGARRIVAGDNGELYYTDDHYASFRRVRQ
>Mature_202_residues
STRLRRGLEFGLGLIILIGLIWFNNLPSSDQPTPSPNPSATIEISSRGLPSSTPQQATSRPRQTAVATAKPTTRPRQTVM
PTAKPTTRPRPSPTVAPTARATRTPERDSAGLRYVAFGDLPIQAQATIRLIEQGGPFPYSKDGAIFNNREQILPSKPRGY
YREYTVETPGSADRGARRIVAGDNGELYYTDDHYASFRRVRQ

Specific function: Unknown

COG id: COG4290

COG function: function code F; Guanyl-specific ribonuclease Sa

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribonuclease N1/T1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000026
- InterPro:   IPR016191 [H]

Pfam domain/function: PF00545 Ribonuclease [H]

EC number: =3.1.27.3 [H]

Molecular weight: Translated: 22381; Mature: 22250

Theoretical pI: Translated: 11.13; Mature: 11.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTRLRRGLEFGLGLIILIGLIWFNNLPSSDQPTPSPNPSATIEISSRGLPSSTPQQATS
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHC
RPRQTAVATAKPTTRPRQTVMPTAKPTTRPRPSPTVAPTARATRTPERDSAGLRYVAFGD
CCCHHEEEECCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
LPIQAQATIRLIEQGGPFPYSKDGAIFNNREQILPSKPRGYYREYTVETPGSADRGARRI
CCCCHHHEEEEEECCCCCCCCCCCCEECCHHHCCCCCCCCCEEEEEEECCCCCCCCCEEE
VAGDNGELYYTDDHYASFRRVRQ
EECCCCCEEEECCHHHHHHHHCC
>Mature Secondary Structure 
STRLRRGLEFGLGLIILIGLIWFNNLPSSDQPTPSPNPSATIEISSRGLPSSTPQQATS
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHC
RPRQTAVATAKPTTRPRQTVMPTAKPTTRPRPSPTVAPTARATRTPERDSAGLRYVAFGD
CCCHHEEEECCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
LPIQAQATIRLIEQGGPFPYSKDGAIFNNREQILPSKPRGYYREYTVETPGSADRGARRI
CCCCHHHEEEEEECCCCCCCCCCCCEECCHHHCCCCCCCCCEEEEEEECCCCCCCCCEEE
VAGDNGELYYTDDHYASFRRVRQ
EECCCCCEEEECCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1269746 [H]