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The map label for this gene is xylF [H]

Identifier: 159901193

GI number: 159901193

Start: 5978106

End: 5979182

Strand: Reverse

Name: xylF [H]

Synonym: Haur_4681

Alternate gene names: 159901193

Gene position: 5979182-5978106 (Counterclockwise)

Preceding gene: 159901194

Following gene: 159901192

Centisome position: 94.21

GC content: 51.25

Gene sequence:

>1077_bases
ATGCGACGCAGGTTTGTGCTATTGGTACTTTTGCTGGTGCTAGTTGGATGTGGTGGAGCGGAAGCGCCCAAGGCCAAAAT
TATTGCGCTGTTGTTGCCAGAGCAAACCACCAAACGCTATGAAACTGTGGATCGGCCATGGTTCGAGCGCGAAATGAATT
TGCTCTGCAACGATTGTCAGGTGTTGTACTACAACGCCCAAAATAACCCAAGCTTGCAACAACAGCAGGCCGAAGAGGCG
ATCAAGGCTGGGGCACGGGTGTTGGTGCTTGATCCAGTCGATTCGGTCGATGCTCGCACGATTGCTGATCATGCTGCTGA
GCAATCGATTCCAGTTGTGGCCTATGATCGGCTGATTCTTAATTCGCCTGGCGTTACGGCCTATATCTCGTTTGATAACC
AAAAAATCGGCGAATTACAGGCCGAAAGCTTGATTGCCGGCCTTGCCGCGCGTGGCCTGAGTAATCCCAAAATTCTGCTG
CTTCACGGCTCGCTGAGCGATAACAATGCCAGCGAGTACAAGCGTGGAGCCAAAAAGGTTTTTGATCCATTAGTCGCTGC
TGGCAAATTGACGATTATTGGCGAGTTTGATACGCCCGATTGGAAGCCCGCCGAGGCGCAGCAATATGTTGAACGAATGC
TGGCAGCTGGCGATCAGATCGACGGAATTTATGCGGCCAATGATGGTACTGCTGGTGGTGCATTAGTCGCTGTCCAAGCA
GCCAAGCTTGAGCCATTGCCCTTGATTACTGGCCAAGATGCTGAACTCACCGCCGTGCAGCGGATCATCACTGGTGAGCA
ACATATGACGGTGTATAAGGCAATTCGGCCTCAAGCCGAGGCTGCCGCCAAAATCGCTCATGCCTTGATGGTTGGTCAGC
CCATTCCAACCAACTTGGTCAACAATCGCACGGTGGCAAACGGAATTATGAATGTTCCAGCGATTTTGCTCAATCCAGTT
GTGGTCACCAAAGCCACGGTCAAAGATACCATTGTGAGCGATAATTTTTGGTCGCCGCAACAACTTTGCCCAGTCAAATT
AGTACCCGCTTGTGAAGCAGTAGGCATCAAGCCCTAA

Upstream 100 bases:

>100_bases
GGCCGATATTGACCGTTTCGTTGAGCTAAGCGAGCAGTTGTTGGATACCGCTGCCCACTAAACGAAGCCAGCGTCCGCCA
ATGCACAAGGAGTTTTAGCT

Downstream 100 bases:

>100_bases
ACGACAATCAGCATCACACTACAACACCCGATCTGCCTGTGCGGTCGGGTGTTTTTGCGAGGAAATAGCAATGTCAACCC
GTTTACGTCGCGGTTTGGAG

Product: solute-binding protein

Products: ADP; phosphate; xylose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MRRRFVLLVLLLVLVGCGGAEAPKAKIIALLLPEQTTKRYETVDRPWFEREMNLLCNDCQVLYYNAQNNPSLQQQQAEEA
IKAGARVLVLDPVDSVDARTIADHAAEQSIPVVAYDRLILNSPGVTAYISFDNQKIGELQAESLIAGLAARGLSNPKILL
LHGSLSDNNASEYKRGAKKVFDPLVAAGKLTIIGEFDTPDWKPAEAQQYVERMLAAGDQIDGIYAANDGTAGGALVAVQA
AKLEPLPLITGQDAELTAVQRIITGEQHMTVYKAIRPQAEAAAKIAHALMVGQPIPTNLVNNRTVANGIMNVPAILLNPV
VVTKATVKDTIVSDNFWSPQQLCPVKLVPACEAVGIKP

Sequences:

>Translated_358_residues
MRRRFVLLVLLLVLVGCGGAEAPKAKIIALLLPEQTTKRYETVDRPWFEREMNLLCNDCQVLYYNAQNNPSLQQQQAEEA
IKAGARVLVLDPVDSVDARTIADHAAEQSIPVVAYDRLILNSPGVTAYISFDNQKIGELQAESLIAGLAARGLSNPKILL
LHGSLSDNNASEYKRGAKKVFDPLVAAGKLTIIGEFDTPDWKPAEAQQYVERMLAAGDQIDGIYAANDGTAGGALVAVQA
AKLEPLPLITGQDAELTAVQRIITGEQHMTVYKAIRPQAEAAAKIAHALMVGQPIPTNLVNNRTVANGIMNVPAILLNPV
VVTKATVKDTIVSDNFWSPQQLCPVKLVPACEAVGIKP
>Mature_358_residues
MRRRFVLLVLLLVLVGCGGAEAPKAKIIALLLPEQTTKRYETVDRPWFEREMNLLCNDCQVLYYNAQNNPSLQQQQAEEA
IKAGARVLVLDPVDSVDARTIADHAAEQSIPVVAYDRLILNSPGVTAYISFDNQKIGELQAESLIAGLAARGLSNPKILL
LHGSLSDNNASEYKRGAKKVFDPLVAAGKLTIIGEFDTPDWKPAEAQQYVERMLAAGDQIDGIYAANDGTAGGALVAVQA
AKLEPLPLITGQDAELTAVQRIITGEQHMTVYKAIRPQAEAAAKIAHALMVGQPIPTNLVNNRTVANGIMNVPAILLNPV
VVTKATVKDTIVSDNFWSPQQLCPVKLVPACEAVGIKP

Specific function: Involved in the high-affinity D-xylose membrane transport system. Binds with high affinity to xylose [H]

COG id: COG4213

COG function: function code G; ABC-type xylose transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1789990, Length=324, Percent_Identity=36.4197530864198, Blast_Score=177, Evalue=9e-46,

Paralogues:

None

Copy number: 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761
- InterPro:   IPR013456 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 38568; Mature: 38568

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRRFVLLVLLLVLVGCGGAEAPKAKIIALLLPEQTTKRYETVDRPWFEREMNLLCNDCQ
CCCHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHCCCCE
VLYYNAQNNPSLQQQQAEEAIKAGARVLVLDPVDSVDARTIADHAAEQSIPVVAYDRLIL
EEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEECEEEE
NSPGVTAYISFDNQKIGELQAESLIAGLAARGLSNPKILLLHGSLSDNNASEYKRGAKKV
CCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHH
FDPLVAAGKLTIIGEFDTPDWKPAEAQQYVERMLAAGDQIDGIYAANDGTAGGALVAVQA
HHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEEE
AKLEPLPLITGQDAELTAVQRIITGEQHMTVYKAIRPQAEAAAKIAHALMVGQPIPTNLV
CCCCCCCEECCCCCHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHC
NNRTVANGIMNVPAILLNPVVVTKATVKDTIVSDNFWSPQQLCPVKLVPACEAVGIKP
CCCHHHHHHHHCCHHHHCCCCEEEHHHHHHEECCCCCCHHHCCCEEECCCCCCCCCCC
>Mature Secondary Structure
MRRRFVLLVLLLVLVGCGGAEAPKAKIIALLLPEQTTKRYETVDRPWFEREMNLLCNDCQ
CCCHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHCCCCE
VLYYNAQNNPSLQQQQAEEAIKAGARVLVLDPVDSVDARTIADHAAEQSIPVVAYDRLIL
EEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEECEEEE
NSPGVTAYISFDNQKIGELQAESLIAGLAARGLSNPKILLLHGSLSDNNASEYKRGAKKV
CCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHH
FDPLVAAGKLTIIGEFDTPDWKPAEAQQYVERMLAAGDQIDGIYAANDGTAGGALVAVQA
HHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEEE
AKLEPLPLITGQDAELTAVQRIITGEQHMTVYKAIRPQAEAAAKIAHALMVGQPIPTNLV
CCCCCCCEECCCCCHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHC
NNRTVANGIMNVPAILLNPVVVTKATVKDTIVSDNFWSPQQLCPVKLVPACEAVGIKP
CCCHHHHHHHHCCHHHHCCCCEEEHHHHHHEECCCCCCHHHCCCEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; xylose [Periplasm]; H2O [C]

Specific reaction: ATP + xylose [Periplasm] + H2O = ADP + phosphate + xylose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]