| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159901174
Identifier: 159901174
GI number: 159901174
Start: 5959784
End: 5960470
Strand: Direct
Name: 159901174
Synonym: Haur_4662
Alternate gene names: NA
Gene position: 5959784-5960470 (Clockwise)
Preceding gene: 159901171
Following gene: 159901175
Centisome position: 93.91
GC content: 49.93
Gene sequence:
>687_bases ATGAAATTGCGATATTCAACAACGATTATTATTTTTGGGTTGTTAACGGCTTGTGGAACGGCTCCAACCAAGGTCGATGA GCCTTTTCCAACCACTAGTAGTGCAGCCATGGCTACAGCTCAACCAACTATGGATAGCATGATGCAAACTGATGCCCTGA CGATGACCGATGATATGATGCAACCGACCGATGCGATGTCGATGACCGATGATATGATGCAACCAACCGCAATGCCAACG GCTGACGATATGATGCAACCAACCGTAATACCAACGGCTGATACGATGATCCAGCCAACCGTTGAGCCAACCACCGAAGC GCGAGTTGAGCCAACCACCGTGCCAGCCGAACCTGTTGTGTTGGGTTCGGGCAGTTTTCGCGGCATCGATCACAAAAGTG GCGGGATTGCAACGCTCTATCAGCAGCCCGATGGCAGCAATTTGTTGCGCCTCAGCGATTTCTTCGTTGAAGCAGGGCCA GATATGTATATTTTTGTCGCTAAGGCAGCCGAAATTAACCAACCCAGCGATTTACAAGCGGGCTACCTTGAATTAGGCAA ACTCAAAGGCTCCGAGGGCAACCAAAACTACAGCCTGCCTGCCGATTTCGATCCTGCGCTCTATGCCAATGTGGTCATTT GGTGCGAAAAATATCAAGTCTTGATGGCAGTTGCGCCAATCCAGTAG
Upstream 100 bases:
>100_bases CTAGGGTGGGTTTGTTTAGGGTTTTGTAAGTTTTTGGCAAGGCTTGGTTAAGTGCTGGCGGTTATAACTAGGCTATGACA TTTTATGGAGGCTAGCGGCG
Downstream 100 bases:
>100_bases AATAAAGTCAGAAGGCAAAAGGCAAAAGGCAAAAAGAATATAGGGATCAGGGGGCAGAGGCTAGGGATCAGGCCGATCAG CATATAGGGCTAATCAAACA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 228; Mature: 228
Protein sequence:
>228_residues MKLRYSTTIIIFGLLTACGTAPTKVDEPFPTTSSAAMATAQPTMDSMMQTDALTMTDDMMQPTDAMSMTDDMMQPTAMPT ADDMMQPTVIPTADTMIQPTVEPTTEARVEPTTVPAEPVVLGSGSFRGIDHKSGGIATLYQQPDGSNLLRLSDFFVEAGP DMYIFVAKAAEINQPSDLQAGYLELGKLKGSEGNQNYSLPADFDPALYANVVIWCEKYQVLMAVAPIQ
Sequences:
>Translated_228_residues MKLRYSTTIIIFGLLTACGTAPTKVDEPFPTTSSAAMATAQPTMDSMMQTDALTMTDDMMQPTDAMSMTDDMMQPTAMPT ADDMMQPTVIPTADTMIQPTVEPTTEARVEPTTVPAEPVVLGSGSFRGIDHKSGGIATLYQQPDGSNLLRLSDFFVEAGP DMYIFVAKAAEINQPSDLQAGYLELGKLKGSEGNQNYSLPADFDPALYANVVIWCEKYQVLMAVAPIQ >Mature_228_residues MKLRYSTTIIIFGLLTACGTAPTKVDEPFPTTSSAAMATAQPTMDSMMQTDALTMTDDMMQPTDAMSMTDDMMQPTAMPT ADDMMQPTVIPTADTMIQPTVEPTTEARVEPTTVPAEPVVLGSGSFRGIDHKSGGIATLYQQPDGSNLLRLSDFFVEAGP DMYIFVAKAAEINQPSDLQAGYLELGKLKGSEGNQNYSLPADFDPALYANVVIWCEKYQVLMAVAPIQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24596; Mature: 24596
Theoretical pI: Translated: 3.87; Mature: 3.87
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 7.9 %Met (Translated Protein) 8.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 7.9 %Met (Mature Protein) 8.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLRYSTTIIIFGLLTACGTAPTKVDEPFPTTSSAAMATAQPTMDSMMQTDALTMTDDMM CEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHCCCEECHHHC QPTDAMSMTDDMMQPTAMPTADDMMQPTVIPTADTMIQPTVEPTTEARVEPTTVPAEPVV CCCHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEE LGSGSFRGIDHKSGGIATLYQQPDGSNLLRLSDFFVEAGPDMYIFVAKAAEINQPSDLQA ECCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEHHHCCCCEEEEEEECCCCCCCCCCCC GYLELGKLKGSEGNQNYSLPADFDPALYANVVIWCEKYQVLMAVAPIQ CHHHHHEECCCCCCCCCCCCCCCCCHHHEEEEEEEEEEEEEEEEECCC >Mature Secondary Structure MKLRYSTTIIIFGLLTACGTAPTKVDEPFPTTSSAAMATAQPTMDSMMQTDALTMTDDMM CEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHCCCEECHHHC QPTDAMSMTDDMMQPTAMPTADDMMQPTVIPTADTMIQPTVEPTTEARVEPTTVPAEPVV CCCHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEE LGSGSFRGIDHKSGGIATLYQQPDGSNLLRLSDFFVEAGPDMYIFVAKAAEINQPSDLQA ECCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEHHHCCCCEEEEEEECCCCCCCCCCCC GYLELGKLKGSEGNQNYSLPADFDPALYANVVIWCEKYQVLMAVAPIQ CHHHHHEECCCCCCCCCCCCCCCCCHHHEEEEEEEEEEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA