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The map label for this gene is yxjL [H]

Identifier: 159901160

GI number: 159901160

Start: 5938534

End: 5939193

Strand: Reverse

Name: yxjL [H]

Synonym: Haur_4648

Alternate gene names: 159901160

Gene position: 5939193-5938534 (Counterclockwise)

Preceding gene: 159901161

Following gene: 159901159

Centisome position: 93.58

GC content: 51.97

Gene sequence:

>660_bases
ATGCGGATCCTGATTGTTGATGATCATCCGGTGTTTCGGGAAGGGGTACGTGCCCTGCTCGAAACCCACGATGAGATGGA
AGTTGTTGGCGTGCTTGGGCATGGGCGCGACGCTGCCGTAGTTGCTAAAGATCAATTTGTTGATGTGGCCTTGCTCGATG
TGAGCTTGCCCGATATGCCTGGCTATGAAGTTTGTCGCTCCATTGTGGAAGCGTCGCCACGCACTCGCGTGTTGATGTTG
ACCGCCAACGACACCAACGATGTGATTCGCCAATCGCTGGCCGCTGGGGCTGCTGGCTATGTGCTCAAAACCGAAGATCC
CTCACGCTTGATCAGCCACATCAGTGCAGTTGCTCAAGGTGAAACAGTTTTGGCTGGCCCAATTGCTCAAAAAGTTGTGC
GCCAACTATTGGAAGGCCCACAGCCAACCGTCTCGACCAAAACCAACGATGCCCTGAATGCCTTGACCGAACGCGAACGC
CAAGTCTTTTTCTTGGCAGCCGAAGGGCGGCGCAACAGCGATATTGCTCAGCAATTAATTCTGAGCGAAGAAACAATTAA
AACCCACTTGCGCAATATTTATAGCAAATTAGGTTTAGGCAATAAAGCTGAATTACGCTTGTTCGCGGTGCAAGCTCGCC
TCGCACCACCCCAAATCTAA

Upstream 100 bases:

>100_bases
AATTAATCGTAATTTTGTTCGTAAACTCTCACCCCTAGAGTGGATATGCATTGTCCATTTTTTGACCGTTTTCGCATCTG
TTCTGAAGAAGGAGTACCCC

Downstream 100 bases:

>100_bases
GCTAAAATTCCCACAATCGAGGGATAAAACAGGGCTTGGACGTGGAGATCAGTTCATGCTAAGATGAAAATCATTGCAAT
TGACCCTTGTGGTTTGAGTA

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MRILIVDDHPVFREGVRALLETHDEMEVVGVLGHGRDAAVVAKDQFVDVALLDVSLPDMPGYEVCRSIVEASPRTRVLML
TANDTNDVIRQSLAAGAAGYVLKTEDPSRLISHISAVAQGETVLAGPIAQKVVRQLLEGPQPTVSTKTNDALNALTERER
QVFFLAAEGRRNSDIAQQLILSEETIKTHLRNIYSKLGLGNKAELRLFAVQARLAPPQI

Sequences:

>Translated_219_residues
MRILIVDDHPVFREGVRALLETHDEMEVVGVLGHGRDAAVVAKDQFVDVALLDVSLPDMPGYEVCRSIVEASPRTRVLML
TANDTNDVIRQSLAAGAAGYVLKTEDPSRLISHISAVAQGETVLAGPIAQKVVRQLLEGPQPTVSTKTNDALNALTERER
QVFFLAAEGRRNSDIAQQLILSEETIKTHLRNIYSKLGLGNKAELRLFAVQARLAPPQI
>Mature_219_residues
MRILIVDDHPVFREGVRALLETHDEMEVVGVLGHGRDAAVVAKDQFVDVALLDVSLPDMPGYEVCRSIVEASPRTRVLML
TANDTNDVIRQSLAAGAAGYVLKTEDPSRLISHISAVAQGETVLAGPIAQKVVRQLLEGPQPTVSTKTNDALNALTERER
QVFFLAAEGRRNSDIAQQLILSEETIKTHLRNIYSKLGLGNKAELRLFAVQARLAPPQI

Specific function: Probable member of the two-component regulatory system yxjM/yxjL [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788222, Length=215, Percent_Identity=32.5581395348837, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1788521, Length=213, Percent_Identity=33.3333333333333, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1790102, Length=208, Percent_Identity=33.1730769230769, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1787473, Length=217, Percent_Identity=30.4147465437788, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1786747, Length=207, Percent_Identity=25.6038647342995, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788712, Length=216, Percent_Identity=24.537037037037, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR011990
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23921; Mature: 23921

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILIVDDHPVFREGVRALLETHDEMEVVGVLGHGRDAAVVAKDQFVDVALLDVSLPDMP
CEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECCCEEEEEEEEEECCCCC
GYEVCRSIVEASPRTRVLMLTANDTNDVIRQSLAAGAAGYVLKTEDPSRLISHISAVAQG
CHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCC
ETVLAGPIAQKVVRQLLEGPQPTVSTKTNDALNALTERERQVFFLAAEGRRNSDIAQQLI
CEEEECHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHH
LSEETIKTHLRNIYSKLGLGNKAELRLFAVQARLAPPQI
HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCC
>Mature Secondary Structure
MRILIVDDHPVFREGVRALLETHDEMEVVGVLGHGRDAAVVAKDQFVDVALLDVSLPDMP
CEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECCCEEEEEEEEEECCCCC
GYEVCRSIVEASPRTRVLMLTANDTNDVIRQSLAAGAAGYVLKTEDPSRLISHISAVAQG
CHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCC
ETVLAGPIAQKVVRQLLEGPQPTVSTKTNDALNALTERERQVFFLAAEGRRNSDIAQQLI
CEEEECHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHH
LSEETIKTHLRNIYSKLGLGNKAELRLFAVQARLAPPQI
HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8978088; 8969509; 9384377 [H]