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The map label for this gene is ybiS [C]

Identifier: 159901130

GI number: 159901130

Start: 5904366

End: 5905478

Strand: Reverse

Name: ybiS [C]

Synonym: Haur_4618

Alternate gene names: 159901130

Gene position: 5905478-5904366 (Counterclockwise)

Preceding gene: 159901131

Following gene: 159901129

Centisome position: 93.05

GC content: 53.19

Gene sequence:

>1113_bases
ATGCGGCGGATAATCTGGTTGACTCTGGTTTTTGGTTTATGTTTTTGGGCTTTTCGCACCTCCCAAGCAGTGACCCCTGC
GCTCACCGATACCTATGGGTTTGCTTCGTTTTGGCAAACTAATGGCGGCGAGTTGATTTTTGGTCAACCAATTACCGATC
CCTTAGAACAAGATGAGCTGGTTGTGCAATATTTTGAAAATGCGCGCTTCGAGTATGATCCGCAAACTGATAGCGTTGGC
TTGGGCTTGGTTGGCCGCGAACGCACCGAATGGCGCGATTTTGGCCCACAACCACGTTTAGCCGCCGCAAGCTTACGCCC
CGAAGGCGCTAACTACGATCTAACTGGCAGTTTCCGCACATTTTGGGAAACCAACGGTGGTGTAGCAATTTTTGGTTTGC
CAATTAGTCCAGCTCAATTTGAAGCGCGGCCAACCGGGCGCTTCAAGGTGCAATATTTCGAACGAGCCTTGATGATCGAG
CACCCTTTGTTGGCAGGCACGCCTGAGGAGATTGAGCTAGCACCGCTGGGCCAAGAGGTTGCTGCCGCCAGTGGCTTAGT
TGAAGGCATGAGCTACGAGCAGCCCTATTTATTTGAATTTGATCCAGTTGCCCCCGCTCCGGTGCAAACTGCGGCCCCCC
AACCAGTTGCCGAGCCAACCCAAGTGCCGCCAACCGCCGCACCTGCCCAACCAACCAGCCAACCTGTGCCCACTGCCACG
CCCAAGCCAGCCAATCCCAACGTTGGCAAACGCATCGAAGTTGATATTAGCAAGCAATGGTTGTATGCCTACGAAAACGG
CACAGTCGTGTTTGATGCGCCTGTTGCAACCGGCAAAGATGGCTTCAACACGCCAACTGGCAGCTATGAAATTTATGCCA
AAGTGCCGCTGCAAACCATGCGTGGCTCACTTGGTGGCGAGACCTGGGTTGTGCCAAATGTACCGCATGCCATGTACTTC
AATGGCAGTGTGGCGCTCCATGGAACCTACTGGCACAACTTATTTGGCAGTGGCACGCGGATTAGCCATGGCTGTGTTAA
CTTACCACTAGATGCTGCGGCCTGGCTCTACAATTGGGCTGGTGTCGGCACAACCGTCCAAGTATATTACTAA

Upstream 100 bases:

>100_bases
TCAGCTTTCCCACCAATCTGAATTGACAGCGGCTCATTGCACTGCTACGATGAAGCCGCACCTTGCTTCTAGCCTCAGGT
ATCAGTCGGAGAATACAGCT

Downstream 100 bases:

>100_bases
AATTTATGCTGGCGGGCGGCCTGCTACACGTTGTTGAGGAGAATGATATGACCCAACACGTTGGAATTATTGACCTTGGC
TCCAACACCGCCCGCATGAT

Product: ErfK/YbiS/YcfS/YnhG family protein

Products: NA

Alternate protein names: Sortase Family Protein; ErfK/YbiS/YcfS/YnhG Superfamily Protein; ErfK/YbiS/YcfS/YnhG Family; VanW Family Protein; N-Acetylmuramoyl-L-Alanine Amidase Domain Protein; YkuD Domain-Containing Protein; Excalibur Domain Protein; Erfk/Ybis/Ycfs/Ynhg Family Protein; Peptidase S8 And; ErfK/YbiS/YcfS/YnhG; Glycoside Hydrolase Family; Polysaccharide Deacetylase; Ig Domain Domain Protein; ErfK Family Protein; Secreted Protein

Number of amino acids: Translated: 370; Mature: 370

Protein sequence:

>370_residues
MRRIIWLTLVFGLCFWAFRTSQAVTPALTDTYGFASFWQTNGGELIFGQPITDPLEQDELVVQYFENARFEYDPQTDSVG
LGLVGRERTEWRDFGPQPRLAAASLRPEGANYDLTGSFRTFWETNGGVAIFGLPISPAQFEARPTGRFKVQYFERALMIE
HPLLAGTPEEIELAPLGQEVAAASGLVEGMSYEQPYLFEFDPVAPAPVQTAAPQPVAEPTQVPPTAAPAQPTSQPVPTAT
PKPANPNVGKRIEVDISKQWLYAYENGTVVFDAPVATGKDGFNTPTGSYEIYAKVPLQTMRGSLGGETWVVPNVPHAMYF
NGSVALHGTYWHNLFGSGTRISHGCVNLPLDAAAWLYNWAGVGTTVQVYY

Sequences:

>Translated_370_residues
MRRIIWLTLVFGLCFWAFRTSQAVTPALTDTYGFASFWQTNGGELIFGQPITDPLEQDELVVQYFENARFEYDPQTDSVG
LGLVGRERTEWRDFGPQPRLAAASLRPEGANYDLTGSFRTFWETNGGVAIFGLPISPAQFEARPTGRFKVQYFERALMIE
HPLLAGTPEEIELAPLGQEVAAASGLVEGMSYEQPYLFEFDPVAPAPVQTAAPQPVAEPTQVPPTAAPAQPTSQPVPTAT
PKPANPNVGKRIEVDISKQWLYAYENGTVVFDAPVATGKDGFNTPTGSYEIYAKVPLQTMRGSLGGETWVVPNVPHAMYF
NGSVALHGTYWHNLFGSGTRISHGCVNLPLDAAAWLYNWAGVGTTVQVYY
>Mature_370_residues
MRRIIWLTLVFGLCFWAFRTSQAVTPALTDTYGFASFWQTNGGELIFGQPITDPLEQDELVVQYFENARFEYDPQTDSVG
LGLVGRERTEWRDFGPQPRLAAASLRPEGANYDLTGSFRTFWETNGGVAIFGLPISPAQFEARPTGRFKVQYFERALMIE
HPLLAGTPEEIELAPLGQEVAAASGLVEGMSYEQPYLFEFDPVAPAPVQTAAPQPVAEPTQVPPTAAPAQPTSQPVPTAT
PKPANPNVGKRIEVDISKQWLYAYENGTVVFDAPVATGKDGFNTPTGSYEIYAKVPLQTMRGSLGGETWVVPNVPHAMYF
NGSVALHGTYWHNLFGSGTRISHGCVNLPLDAAAWLYNWAGVGTTVQVYY

Specific function: Unknown

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40576; Mature: 40576

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRIIWLTLVFGLCFWAFRTSQAVTPALTDTYGFASFWQTNGGELIFGQPITDPLEQDEL
CCEEEHHHHHHHHHHHHHHCCCCCCCCHHCCCCCHHHEECCCCEEEECCCCCCCCCHHHH
VVQYFENARFEYDPQTDSVGLGLVGRERTEWRDFGPQPRLAAASLRPEGANYDLTGSFRT
HHHHHHCCCEEECCCCCCEEEEECCCCCCHHHHCCCCCCEEEEECCCCCCCEEECCCEEE
FWETNGGVAIFGLPISPAQFEARPTGRFKVQYFERALMIEHPLLAGTPEEIELAPLGQEV
EEECCCCEEEEEECCCCCCCCCCCCCCEEEHHHHHHHHHCCCCCCCCCCCEEEECCCHHH
AAASGLVEGMSYEQPYLFEFDPVAPAPVQTAAPQPVAEPTQVPPTAAPAQPTSQPVPTAT
HHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PKPANPNVGKRIEVDISKQWLYAYENGTVVFDAPVATGKDGFNTPTGSYEIYAKVPLQTM
CCCCCCCCCCEEEEEECCEEEEEEECCEEEEECCCCCCCCCCCCCCCCEEEEEECCHHHH
RGSLGGETWVVPNVPHAMYFNGSVALHGTYWHNLFGSGTRISHGCVNLPLDAAAWLYNWA
CCCCCCCEEEECCCCCEEEECCEEEEEEEHHHHHCCCCCEECCCEEECCCHHHHHHHHHC
GVGTTVQVYY
CCCEEEEEEC
>Mature Secondary Structure
MRRIIWLTLVFGLCFWAFRTSQAVTPALTDTYGFASFWQTNGGELIFGQPITDPLEQDEL
CCEEEHHHHHHHHHHHHHHCCCCCCCCHHCCCCCHHHEECCCCEEEECCCCCCCCCHHHH
VVQYFENARFEYDPQTDSVGLGLVGRERTEWRDFGPQPRLAAASLRPEGANYDLTGSFRT
HHHHHHCCCEEECCCCCCEEEEECCCCCCHHHHCCCCCCEEEEECCCCCCCEEECCCEEE
FWETNGGVAIFGLPISPAQFEARPTGRFKVQYFERALMIEHPLLAGTPEEIELAPLGQEV
EEECCCCEEEEEECCCCCCCCCCCCCCEEEHHHHHHHHHCCCCCCCCCCCEEEECCCHHH
AAASGLVEGMSYEQPYLFEFDPVAPAPVQTAAPQPVAEPTQVPPTAAPAQPTSQPVPTAT
HHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PKPANPNVGKRIEVDISKQWLYAYENGTVVFDAPVATGKDGFNTPTGSYEIYAKVPLQTM
CCCCCCCCCCEEEEEECCEEEEEEECCEEEEECCCCCCCCCCCCCCCCEEEEEECCHHHH
RGSLGGETWVVPNVPHAMYFNGSVALHGTYWHNLFGSGTRISHGCVNLPLDAAAWLYNWA
CCCCCCCEEEECCCCCEEEECCEEEEEEEHHHHHCCCCCEECCCEEECCCHHHHHHHHHC
GVGTTVQVYY
CCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA