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The map label for this gene is ybeX [C]

Identifier: 159901100

GI number: 159901100

Start: 5869383

End: 5870666

Strand: Reverse

Name: ybeX [C]

Synonym: Haur_4588

Alternate gene names: 159901100

Gene position: 5870666-5869383 (Counterclockwise)

Preceding gene: 159901107

Following gene: 159901099

Centisome position: 92.5

GC content: 51.95

Gene sequence:

>1284_bases
ATGGACCCTGCATCTAGTTTAGAGCTGCTTGGGCTAGCGATGTGTCTCATTATTGTGAGTGTCGCCTCAGCAGCCGAAGC
AGCGCTCTCTACTATCTCACGCCACCGAATGAATACGCTGTTGGAGAACGGCGAACGCCGCGCCAACGTGGCTATGCGCC
TGTTGGAAGACCCCTATCATCTGCGAATTGGGACGTTGTTGCTCAGTACCGTCGGGACGATTGGCGCAACGGCGCTGCTC
TTGACGTTTGTCGCCAATCGCACTGGTTGGCAGCAAGCCTCGTTTCTGTTGATCTTTCTGCTGGTTTGGCTCACCATCGG
CACAACCTTACCCAAAACCCTCGCCACCGCCTATCCCGATAGTATGGTGCTTTGGACGGTGCGTCCATTGCGGATTTTGC
TGTGGCTGGTTGCGCCAATGCAATGGCTGTTGCGCCAAATTGCCCGCCCAATTGGCTTGGTAACTGGCCAGCATCCTCTC
ATCGTTACCGAGGAAGAACTGAAATTAATGGTCAACGTCGGCGAAGAAGAGGGCGTGATCGAGGCCGAAGAACGCGATAT
GATCGAGGGTATTTTTGAATTTAGCGATACGGCTGTACGCGAAGTGATGGTCCCACGGATTGATATCGTCGGTTTGGCTG
CGACTGCCTCGATGGAAGAAGCACTGAATTTGTTTATTAGTGCTGGCCACTCGCGGTTGCCGATCTACGACGAGTCAATT
GACCATGTGCTCGGAGTGTTGTACGCTAAGGATCTGTTTCCGCTGTTGCGTGATGGGTTGCGTGATGCGCCATTACGCTC
CTTGGTACGCCAGTCCTATTTTGTGCCCGATTCGATCAAAGTTGATGATTTGATGCGGGCTTTGCAAAGCCGCAAAGTGC
ACATGGCGATTATCGTCGATGAATATGGCAGCACGGCGGGCTTAGTCACAATTGAGGATTTGCTGGAAGAGATCGTTGGC
GAAATTCAGGATGAGTTCGATAGCGAAGAAGCGCCGATTCAACAGGTTGGCCCTCACGAATGGCTGTTCGATGGTCGGGT
CTCAATTGATGCAGTCAATGATGCCACAGAGTTAACATTAATCAATGACGATGTAGATAGTCTCGGTGGCTTCGTTTTGT
CGATGTTAGGCTCAATGCCCAAAGTCGGCGATGTTATCCAAGCTGGAGATACAACAATTGAGGTTGTTACGATTCAAGGC
TTGCGACCACAACGCCTACGCCTAAGCTTAGCCCATGCCGAACACGAGTTCGCCGAGGTTGGGAGTAATACCGATGATGG
TTGA

Upstream 100 bases:

>100_bases
TCGAGGAGGACGAAGGCGACAATCTGGATTGTTGCTGCTGCGTCCCAAAACCAGCCAGCCATAATAGCGCCGTAAGGCCC
GATTGAAGCCGATTGAACCC

Downstream 100 bases:

>100_bases
CTACCAAGCCCTGTTAGCCAACGCCAAAACCGCCCGCGAACGAGCTTACACGCCCTACTCACGTTTCAAAGTTGGCGCAG
CAGTGCTGACGGCCAGCGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 427

Protein sequence:

>427_residues
MDPASSLELLGLAMCLIIVSVASAAEAALSTISRHRMNTLLENGERRANVAMRLLEDPYHLRIGTLLLSTVGTIGATALL
LTFVANRTGWQQASFLLIFLLVWLTIGTTLPKTLATAYPDSMVLWTVRPLRILLWLVAPMQWLLRQIARPIGLVTGQHPL
IVTEEELKLMVNVGEEEGVIEAEERDMIEGIFEFSDTAVREVMVPRIDIVGLAATASMEEALNLFISAGHSRLPIYDESI
DHVLGVLYAKDLFPLLRDGLRDAPLRSLVRQSYFVPDSIKVDDLMRALQSRKVHMAIIVDEYGSTAGLVTIEDLLEEIVG
EIQDEFDSEEAPIQQVGPHEWLFDGRVSIDAVNDATELTLINDDVDSLGGFVLSMLGSMPKVGDVIQAGDTTIEVVTIQG
LRPQRLRLSLAHAEHEFAEVGSNTDDG

Sequences:

>Translated_427_residues
MDPASSLELLGLAMCLIIVSVASAAEAALSTISRHRMNTLLENGERRANVAMRLLEDPYHLRIGTLLLSTVGTIGATALL
LTFVANRTGWQQASFLLIFLLVWLTIGTTLPKTLATAYPDSMVLWTVRPLRILLWLVAPMQWLLRQIARPIGLVTGQHPL
IVTEEELKLMVNVGEEEGVIEAEERDMIEGIFEFSDTAVREVMVPRIDIVGLAATASMEEALNLFISAGHSRLPIYDESI
DHVLGVLYAKDLFPLLRDGLRDAPLRSLVRQSYFVPDSIKVDDLMRALQSRKVHMAIIVDEYGSTAGLVTIEDLLEEIVG
EIQDEFDSEEAPIQQVGPHEWLFDGRVSIDAVNDATELTLINDDVDSLGGFVLSMLGSMPKVGDVIQAGDTTIEVVTIQG
LRPQRLRLSLAHAEHEFAEVGSNTDDG
>Mature_427_residues
MDPASSLELLGLAMCLIIVSVASAAEAALSTISRHRMNTLLENGERRANVAMRLLEDPYHLRIGTLLLSTVGTIGATALL
LTFVANRTGWQQASFLLIFLLVWLTIGTTLPKTLATAYPDSMVLWTVRPLRILLWLVAPMQWLLRQIARPIGLVTGQHPL
IVTEEELKLMVNVGEEEGVIEAEERDMIEGIFEFSDTAVREVMVPRIDIVGLAATASMEEALNLFISAGHSRLPIYDESI
DHVLGVLYAKDLFPLLRDGLRDAPLRSLVRQSYFVPDSIKVDDLMRALQSRKVHMAIIVDEYGSTAGLVTIEDLLEEIVG
EIQDEFDSEEAPIQQVGPHEWLFDGRVSIDAVNDATELTLINDDVDSLGGFVLSMLGSMPKVGDVIQAGDTTIEVVTIQG
LRPQRLRLSLAHAEHEFAEVGSNTDDG

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=383, Percent_Identity=28.9817232375979, Blast_Score=150, Evalue=3e-36,
Organism=Homo sapiens, GI94681046, Length=237, Percent_Identity=25.3164556962025, Blast_Score=76, Evalue=7e-14,
Organism=Homo sapiens, GI40068053, Length=237, Percent_Identity=22.7848101265823, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI40068055, Length=237, Percent_Identity=22.7848101265823, Blast_Score=67, Evalue=3e-11,
Organism=Escherichia coli, GI1786879, Length=224, Percent_Identity=34.8214285714286, Blast_Score=155, Evalue=5e-39,
Organism=Escherichia coli, GI145693175, Length=397, Percent_Identity=27.9596977329975, Blast_Score=141, Evalue=8e-35,
Organism=Escherichia coli, GI1790664, Length=422, Percent_Identity=23.9336492890995, Blast_Score=129, Evalue=5e-31,
Organism=Escherichia coli, GI1788119, Length=242, Percent_Identity=28.5123966942149, Blast_Score=105, Evalue=6e-24,
Organism=Escherichia coli, GI87082033, Length=250, Percent_Identity=27.2, Blast_Score=101, Evalue=9e-23,
Organism=Saccharomyces cerevisiae, GI6324512, Length=337, Percent_Identity=24.6290801186944, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 46983; Mature: 46983

Theoretical pI: Translated: 4.28; Mature: 4.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPASSLELLGLAMCLIIVSVASAAEAALSTISRHRMNTLLENGERRANVAMRLLEDPYH
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCH
LRIGTLLLSTVGTIGATALLLTFVANRTGWQQASFLLIFLLVWLTIGTTLPKTLATAYPD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCC
SMVLWTVRPLRILLWLVAPMQWLLRQIARPIGLVTGQHPLIVTEEELKLMVNVGEEEGVI
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHEEEEECCCCCCCE
EAEERDMIEGIFEFSDTAVREVMVPRIDIVGLAATASMEEALNLFISAGHSRLPIYDESI
ECHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
DHVLGVLYAKDLFPLLRDGLRDAPLRSLVRQSYFVPDSIKVDDLMRALQSRKVHMAIIVD
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEEEEEEE
EYGSTAGLVTIEDLLEEIVGEIQDEFDSEEAPIQQVGPHEWLFDGRVSIDAVNDATELTL
CCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCEEECCCEEEEECCCCEEEEE
INDDVDSLGGFVLSMLGSMPKVGDVIQAGDTTIEVVTIQGLRPQRLRLSLAHAEHEFAEV
ECCCHHHHHHHHHHHHCCCCCCCHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHC
GSNTDDG
CCCCCCC
>Mature Secondary Structure
MDPASSLELLGLAMCLIIVSVASAAEAALSTISRHRMNTLLENGERRANVAMRLLEDPYH
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCH
LRIGTLLLSTVGTIGATALLLTFVANRTGWQQASFLLIFLLVWLTIGTTLPKTLATAYPD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCC
SMVLWTVRPLRILLWLVAPMQWLLRQIARPIGLVTGQHPLIVTEEELKLMVNVGEEEGVI
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHEEEEECCCCCCCE
EAEERDMIEGIFEFSDTAVREVMVPRIDIVGLAATASMEEALNLFISAGHSRLPIYDESI
ECHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
DHVLGVLYAKDLFPLLRDGLRDAPLRSLVRQSYFVPDSIKVDDLMRALQSRKVHMAIIVD
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEEEEEEE
EYGSTAGLVTIEDLLEEIVGEIQDEFDSEEAPIQQVGPHEWLFDGRVSIDAVNDATELTL
CCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCEEECCCEEEEECCCCEEEEE
INDDVDSLGGFVLSMLGSMPKVGDVIQAGDTTIEVVTIQGLRPQRLRLSLAHAEHEFAEV
ECCCHHHHHHHHHHHHCCCCCCCHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHC
GSNTDDG
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]