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The map label for this gene is sigK [H]

Identifier: 159901085

GI number: 159901085

Start: 5851001

End: 5851621

Strand: Reverse

Name: sigK [H]

Synonym: Haur_4573

Alternate gene names: 159901085

Gene position: 5851621-5851001 (Counterclockwise)

Preceding gene: 159901087

Following gene: 159901084

Centisome position: 92.2

GC content: 54.43

Gene sequence:

>621_bases
GTGGCAAATCAACCAGCTTCGAATGCGGCGCGGGCCGCAGCTTCGGGTGATCAGGCAGATTTAGCGTTGGCAGCCGAGCT
AGCCGCAGGCAATATACAAGCCCTAGAAATATTGTACGAGCGCTATGCCCGACCAATTTTCTCGTTGGCACTGCGGATTT
TGGGCAATGAGGCCGATGCTGAAGAAGTGATGCAAGATGTTTTAGAGCGGGTTTGGCGTTATTCAGGGAGTTTCGACGCA
CAACGTGGCCGCTTTGGCTCGTGGGTCTTAGGTATGACCCATCACGTCGCAATCGATGCAGTTCGCAAGCGTAGCCGCCG
CCCACAAGCGGTCGATGCTGAGGCCAGCGAACTCATGCTTGGCCTCATTTCCGACCCAAACCAACCTGATATGACCGACC
AAGCCATCCAGCATGAGCAAGCTGGACAGGTTCGTGATGCTTTGCGCAGTTTGCCCGAAGCCCAACAACAAGCGATCGAA
TTGGCATTTTTTCGTGGCCTGAGTCATCTGGAGATTGCCGCAACAACAGGTGAACCTTTAGGGACGGTCAAAACCCGCAT
TCGTCGGGGCATGGAACGGCTTCGCACCGTTCTCTCCAAAACAGGGGTATTCAATGACTGA

Upstream 100 bases:

>100_bases
ATACGTTAGAATCAATTAGTCTGGATGCATACTGATTATCTTATGGCCCATCGCATCCATTTTTCGTTGGATGACGAACA
TAAGATCAGAAAGGATTTCA

Downstream 100 bases:

>100_bases
CCAACGTGACGAACTTATCGAACTGTATGCACTTGGTGCTCTGCCTGCTGATGAAGCAGCTGAGGTTGAGGATTATTTGG
CCTCAAATAGCCAAGCGCAA

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-K factor [H]

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MANQPASNAARAAASGDQADLALAAELAAGNIQALEILYERYARPIFSLALRILGNEADAEEVMQDVLERVWRYSGSFDA
QRGRFGSWVLGMTHHVAIDAVRKRSRRPQAVDAEASELMLGLISDPNQPDMTDQAIQHEQAGQVRDALRSLPEAQQQAIE
LAFFRGLSHLEIAATTGEPLGTVKTRIRRGMERLRTVLSKTGVFND

Sequences:

>Translated_206_residues
MANQPASNAARAAASGDQADLALAAELAAGNIQALEILYERYARPIFSLALRILGNEADAEEVMQDVLERVWRYSGSFDA
QRGRFGSWVLGMTHHVAIDAVRKRSRRPQAVDAEASELMLGLISDPNQPDMTDQAIQHEQAGQVRDALRSLPEAQQQAIE
LAFFRGLSHLEIAATTGEPLGTVKTRIRRGMERLRTVLSKTGVFND
>Mature_205_residues
ANQPASNAARAAASGDQADLALAAELAAGNIQALEILYERYARPIFSLALRILGNEADAEEVMQDVLERVWRYSGSFDAQ
RGRFGSWVLGMTHHVAIDAVRKRSRRPQAVDAEASELMLGLISDPNQPDMTDQAIQHEQAGQVRDALRSLPEAQQQAIEL
AFFRGLSHLEIAATTGEPLGTVKTRIRRGMERLRTVLSKTGVFND

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=181, Percent_Identity=29.2817679558011, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 22609; Mature: 22478

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANQPASNAARAAASGDQADLALAAELAAGNIQALEILYERYARPIFSLALRILGNEADA
CCCCCCCHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
EEVMQDVLERVWRYSGSFDAQRGRFGSWVLGMTHHVAIDAVRKRSRRPQAVDAEASELML
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
GLISDPNQPDMTDQAIQHEQAGQVRDALRSLPEAQQQAIELAFFRGLSHLEIAATTGEPL
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHEEEECCCCCH
GTVKTRIRRGMERLRTVLSKTGVFND
HHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
ANQPASNAARAAASGDQADLALAAELAAGNIQALEILYERYARPIFSLALRILGNEADA
CCCCCCHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
EEVMQDVLERVWRYSGSFDAQRGRFGSWVLGMTHHVAIDAVRKRSRRPQAVDAEASELML
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
GLISDPNQPDMTDQAIQHEQAGQVRDALRSLPEAQQQAIELAFFRGLSHLEIAATTGEPL
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHEEEECCCCCH
GTVKTRIRRGMERLRTVLSKTGVFND
HHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA